General information for g8694.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8694 is located on chr_2: 32306300..32307217 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8694 | g8694.t1 | TTS | g8694.t1 | 32301727 | 32301727 |
| chr_2 | g8694 | g8694.t1 | isoform | g8694.t1 | 32302061 | 32307180 |
| chr_2 | g8694 | g8694.t1 | exon | g8694.t1.exon1 | 32302061 | 32302633 |
| chr_2 | g8694 | g8694.t1 | cds | g8694.t1.CDS1 | 32302061 | 32302633 |
| chr_2 | g8694 | g8694.t1 | exon | g8694.t1.exon2 | 32302769 | 32303214 |
| chr_2 | g8694 | g8694.t1 | cds | g8694.t1.CDS2 | 32302769 | 32303214 |
| chr_2 | g8694 | g8694.t1 | exon | g8694.t1.exon3 | 32306378 | 32307114 |
| chr_2 | g8694 | g8694.t1 | cds | g8694.t1.CDS3 | 32306378 | 32307114 |
| chr_2 | g8694 | g8694.t1 | exon | g8694.t1.exon4 | 32307170 | 32307180 |
| chr_2 | g8694 | g8694.t1 | cds | g8694.t1.CDS4 | 32307170 | 32307180 |
| chr_2 | g8694 | g8694.t1 | TSS | g8694.t1 | 32307217 | 32307217 |
Sequences
>g8694.t1 Gene=g8694 Length=1767
ATGAAATTGAGTTGTATCATTTTGTTCTACTGGTTGGCAATTCTAAACTCTTCATTAGCT
CTTCATTCTGTGACAATTGAATGTAAATATTATTTGGAAGTTGACTTTGGTTATGAATGC
ATAGTTGATAATCAAGAAGTTTTCACTGGTAATCGTGTGATCATCGAAAATGCTATAGGC
CAACATGAAGATGGAAGAACTAATGACGATGTTGAAAGATTTTACATTACCAATGCTACT
AATTTAAAATATTTTCCAAAGAATATCAACAATATTTTCAAAAAAGGTTTAACTAAAATT
GCTATTCAAAATTCAAATCTCATCGAAATCACAAGTGAAGATTTAAAAGTTTATCCAAAA
CTTAAATTTTTATTATTAAATGGAAATCAACTTAAAGTTATCAGAGAAGACACATTTAAA
TTTAACCCAGCCCTTGAATGGATTGTTATGTTTAGCAATAAAATCAAGCATATTGATCCT
AAATCATTTAGTGCATTGAAAAATCTTGAAATATTAGATATGAGAGCGAATTATTGTAAT
TTTGAATCAGCAGATTATAAAGATGCAGTTTTAGAAATGGTAAAAAAAATCGAAAAAGGT
GCATGTCAATCAAACAAATATAAAACAACAACAACCATGAATCCTTTGATCACAATAAAT
GAAAAATTAGAAGGAAATGATCTTCAAGAAAATATAGCAGAAGTCGATGAATATCGGGAT
TATTTAGACGATTATTATGAAAATTCTAATAACCTCAAAAATTCTCAAGTTGAAAATGAT
AAAGCTGAAGAGTCAAATTCTGATTTTGATTCAATTTCATTAAAATCAATCTCTCAAAGT
GACGCAAATATTCAATCAAATCAAGGAAAATCTATTAAAGTGAAACCGATAATTGTTGAC
AGTTCCTTATTAGCAGTAAGAAATTTGCCTAATAATTTACAACTAAAATCCAAGCCATTA
TTAAAACTAGCTGATAAAAGAATTCAAATAAACTGTTCATCCATAGAAGACAAGATTACT
ATTATGAACAAGTTGAAAAGTCAGCAATATAAATATTTTTCTTTTACTGAATCCAGTGAC
AAATCCAAAATTGTCCTTCTCAAAGGATTTTATCTGGATAGCAACTTTGATATCAAGTCT
CAAACAGAAAGTTTGAAAAATATTCTCAGTCAAAGTGACTTAAAAGTTGGAAACAGAGAG
AAATTGCCAGTTCAATGTTTCAATTGTCAGCAATGGGGTCACTCCTCTGTCAATTGTGGA
TTTCCTTCAAGATGCGTCAATAGTGATGAAAATCACCCTGTCGGTCAATGCAGAAGAGTT
AACAAGGAAATCGGTAGTCCGAAGTGTGTCAATTGCAAAGGAGAACATCCAGCAAATTAC
AAGAGATGTCCAATTTTTCTTAATCACCAAAAAAAGATTGATGATATGAAGAAAAAATCG
ACAAAAATCAACACTAAGTTCGCAGCTCAACATAGAATTAGAAGTAGTCAGCAGATATTT
AATGATGAGGATTTTCCACCCCTTATTAATCTCAGTTCTCCAGTTATTAATAATGTACAG
GTGAGCTCAAACCATTCCCAATCAAGAAGTGATCCTTTGTTGAAAAATTTCCATGAAGCA
TGTGAAGAATTTAAGAATCTTCCAAGCATTAGAAATTCAATGGCCATTTTCATTGATTTT
GTTGGAAAATTAAAATTAGCTAAATCAGAAGCCGAAAGACAGATGTGTTTAGCAACTCAT
CTTTTTGATTTCAATTATGAAACTTAA
>g8694.t1 Gene=g8694 Length=588
MKLSCIILFYWLAILNSSLALHSVTIECKYYLEVDFGYECIVDNQEVFTGNRVIIENAIG
QHEDGRTNDDVERFYITNATNLKYFPKNINNIFKKGLTKIAIQNSNLIEITSEDLKVYPK
LKFLLLNGNQLKVIREDTFKFNPALEWIVMFSNKIKHIDPKSFSALKNLEILDMRANYCN
FESADYKDAVLEMVKKIEKGACQSNKYKTTTTMNPLITINEKLEGNDLQENIAEVDEYRD
YLDDYYENSNNLKNSQVENDKAEESNSDFDSISLKSISQSDANIQSNQGKSIKVKPIIVD
SSLLAVRNLPNNLQLKSKPLLKLADKRIQINCSSIEDKITIMNKLKSQQYKYFSFTESSD
KSKIVLLKGFYLDSNFDIKSQTESLKNILSQSDLKVGNREKLPVQCFNCQQWGHSSVNCG
FPSRCVNSDENHPVGQCRRVNKEIGSPKCVNCKGEHPANYKRCPIFLNHQKKIDDMKKKS
TKINTKFAAQHRIRSSQQIFNDEDFPPLINLSSPVINNVQVSSNHSQSRSDPLLKNFHEA
CEEFKNLPSIRNSMAIFIDFVGKLKLAKSEAERQMCLATHLFDFNYET
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8694.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 75 | 222 | 6.8E-16 |
| 2 | g8694.t1 | Pfam | PF13855 | Leucine rich repeat | 119 | 177 | 4.2E-12 |
| 8 | g8694.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 9 | g8694.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 10 | g8694.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 15 | - |
| 11 | g8694.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 7 | g8694.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 588 | - |
| 4 | g8694.t1 | SUPERFAMILY | SSF52058 | L domain-like | 81 | 178 | 2.15E-14 |
| 5 | g8694.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 1 | g8694.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 3 | g8694.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed