General information for g8736.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8736 is located on chr_2: 32711918..32713134 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8736 | g8736.t4 | isoform | g8736.t4 | 32711918 | 32713134 |
| chr_2 | g8736 | g8736.t4 | exon | g8736.t4.exon1 | 32711918 | 32713134 |
| chr_2 | g8736 | g8736.t4 | cds | g8736.t4.CDS1 | 32711918 | 32712442 |
| chr_2 | g8736 | g8736.t4 | TTS | g8736.t4 | 32712580 | 32712580 |
| chr_2 | g8736 | g8736.t4 | TSS | g8736.t4 | 32713132 | 32713132 |
Sequences
>g8736.t4 Gene=g8736 Length=1217
AAGGGCACAAAAATCTGCGAAGTATAGTAAGAATATGGATGGAGCGTCATTTTTTCTAAA
CAAAATTTAAACGTAAATAAGTTAAAAATTGGCATTAAAACGTGTGAAATTTTTTACGGA
TCGTGTGAGCAATAAGGATCAAATCAAGTGATAATTTCAAAACGCTTAAAATCAATAAAA
CCTTTCCCGGAGGAGTAAAATGTTTATGGCGAATTTTTAAGAAAAGAGAACGAGTGAGAG
AAGAAAAAAGAATCCAAGTGTGTATAGCATTTTTTCCTCCTTGTAAATGTTGGTATAATA
TTTCACATTTTTTAATAATAATTTCATAAAAAATGCATAAACATTTAATTCAAAAATATA
ACAAGTGAAGAATTTAGAACAAAATAAATTAATTAAATTTTTTTTCGGAAAGGTGGTAAA
AAAGTTTTTTTTGATAAACTATAACAATTTTTTACATTTTCGAGTCAGAGTAGCGAGAGA
GAAAGAAAAACGCATTATATACTTTTAAACAAGAAGAAAAGAAATTGCAACAGTGTTAGT
GCATTCTCCCGAAATAAAAAAAAAGAAAAGAAAGAAAAATTTATAGTTCCCTTTCACGGA
AGACACATACTACAGCAGAGTGTAGAACTAAAATAAAAAAGAAATTATCATCCAATTATA
TTCGTAAAAAAAAAGTAAATTTTGATAACAGCATGTCTGATCAGCACCGCGGAGGTGCGT
GGAGTTCACGCGAGGACGCTGTATGGTGGCCGGGTGCAATCACAGCTGATCAGAGTAATT
TGCATCATCAACAAATTATAAATCAGCATCATCAGCAAAATCATATGCAACAACAGCAAC
AGCAGCAGCAACAACAAATTCACCAAGTCGTGGTGCAGCAGACACAGAACAATACATCAA
CTTCCAGTGCAGCCTCACAACAGCTTTTCTCATATAAAATGGCCAGTAGTTTTCCATCAA
CTGGCGTTGCAACATCAAATGCGTATGATTATCGTTTAGGAATGGGAGCACAAGGTATGA
ATGTGACTGCTGGTACACAATGGTGGTACACAGCTGCTGGTCAAAATGCTCTTGAAAATT
TGCAAGCTCAACAGCAACAACAACAGCAGCAACAGCAGCAGCAACAACAACAACAACAGC
AGCAACAGCAACAACAACAGCAACATCATCAGCATCAATCTCAAAATATACATAATGTAC
ATTCAAATCAATCCTCG
>g8736.t4 Gene=g8736 Length=175
MSDQHRGGAWSSREDAVWWPGAITADQSNLHHQQIINQHHQQNHMQQQQQQQQQQIHQVV
VQQTQNNTSTSSAASQQLFSYKMASSFPSTGVATSNAYDYRLGMGAQGMNVTAGTQWWYT
AAGQNALENLQAQQQQQQQQQQQQQQQQQQQQQQQQQHHQHQSQNIHNVHSNQSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8736.t4 | Coils | Coil | Coil | 123 | 157 | - |
| 1 | g8736.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 175 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
