Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative phosphatidate phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8749 g8749.t11 TTS g8749.t11 32790268 32790268
chr_2 g8749 g8749.t11 isoform g8749.t11 32790384 32792993
chr_2 g8749 g8749.t11 exon g8749.t11.exon1 32790384 32790538
chr_2 g8749 g8749.t11 cds g8749.t11.CDS1 32790384 32790538
chr_2 g8749 g8749.t11 exon g8749.t11.exon2 32790599 32790928
chr_2 g8749 g8749.t11 cds g8749.t11.CDS2 32790599 32790928
chr_2 g8749 g8749.t11 exon g8749.t11.exon3 32791015 32791189
chr_2 g8749 g8749.t11 cds g8749.t11.CDS3 32791015 32791189
chr_2 g8749 g8749.t11 exon g8749.t11.exon4 32791246 32791397
chr_2 g8749 g8749.t11 cds g8749.t11.CDS4 32791246 32791397
chr_2 g8749 g8749.t11 exon g8749.t11.exon5 32791460 32791634
chr_2 g8749 g8749.t11 cds g8749.t11.CDS5 32791460 32791634
chr_2 g8749 g8749.t11 exon g8749.t11.exon6 32792849 32792993
chr_2 g8749 g8749.t11 TSS g8749.t11 32792996 32792996

Sequences

>g8749.t11 Gene=g8749 Length=1132
CATTTGACAGCATTGAAACGACGCGGCAGTTGACATTTTAGCTTTAAAAAGTGCCTATAT
TTTTCAATTTTTTCTCTTTAAACTGCTTAAAAGTTGTCGAGATTACTACAAAAAGTTCAA
AAATTTTAGTGAAAATTTAAAAATTATGACAAACAGGCCCAATCGGTCAATACAAGCAAT
ACAAGAAGAAGCGACTGAAAACAGCCCATTAAACAATCGACCTGTATCTACAATTGATAA
TTCAAACAAATTCACAATGGATGCTGAAACAAAACGAATATTGACAAAAATTGCTATTGA
TGTAATTCTTTTAGGCTCTGTTGGCTTTCCTGTTCTGGCATATTTCCTCTTTGGAGTTCC
TTATGAACGTGGCTTTTTCTGTGATGATCAATCTTTGATGTATCCGTTTCATGATTCAAC
TGTAACAAGTGCAATGTTATATAGTTTTGGTTTTGGTATACCTACAATTTGCATTCTCAT
AATTGAATACTTAAGATGGAGGCTTAATATGGAACCTGAAAGAGAACTGAAACTTTTTGG
TCGTTCAATCCCCGTTTGGGTTATAAATGCATACAGATTTATAGGCATTCTTCTCTTTGG
AGCTGCTTGCAGTCAATTGATAACTGATATTGCAAAATATACAATTGGTCGATTACGTCC
TCATTTCTTAAGTGTTTGCCAACCGATTATGCCTGATGGAACTAATTGCTCGGATATAAT
AAATCACAACAAATACATCATTGATTTCACATGCAGTAATGAAAATGCTTCAAAAAGGAA
GTTAAAAGAAATGAGATTGAGTTTTCTAAGTGGACATAGTTCATTTAGTATGTACACGAT
GGTCTATGCTGCTCTTTATATTCATAGCCGCATGGAATGGAAAGGATCAAAGTTATTTAA
ACATTTTCTTCAATTTATATTTATTGCATTGGCATGGTATACAGCATTATCAAGAGTCAG
CAATTATAAGCATCACTGGTCCGATGTGATGGCGGGTTCCATTCAAGGTCTATTTGTTTC
ATTGTTAATCGTCTTCGGTGTTTCTGGTCTATTCAAAAATAAATTCAAAATTGTTGAACA
ACCAAAAGGATCACGTTATGAGTTAAACTCGCATAGTACCAGAAGCAATTAG

>g8749.t11 Gene=g8749 Length=328
MTNRPNRSIQAIQEEATENSPLNNRPVSTIDNSNKFTMDAETKRILTKIAIDVILLGSVG
FPVLAYFLFGVPYERGFFCDDQSLMYPFHDSTVTSAMLYSFGFGIPTICILIIEYLRWRL
NMEPERELKLFGRSIPVWVINAYRFIGILLFGAACSQLITDIAKYTIGRLRPHFLSVCQP
IMPDGTNCSDIINHNKYIIDFTCSNENASKRKLKEMRLSFLSGHSSFSMYTMVYAALYIH
SRMEWKGSKLFKHFLQFIFIALAWYTALSRVSNYKHHWSDVMAGSIQGLFVSLLIVFGVS
GLFKNKFKIVEQPKGSRYELNSHSTRSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g8749.t11 CDD cd03384 PAP2_wunen 142 296 6.49639E-70
5 g8749.t11 Gene3D G3DSA:1.20.144.10 - 53 326 8.7E-32
2 g8749.t11 PANTHER PTHR10165 LIPID PHOSPHATE PHOSPHATASE 44 305 1.1E-94
3 g8749.t11 PANTHER PTHR10165:SF173 FI04477P-RELATED 44 305 1.1E-94
1 g8749.t11 Pfam PF01569 PAP2 superfamily 148 297 9.5E-26
7 g8749.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 52 -
14 g8749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 53 73 -
10 g8749.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 74 92 -
17 g8749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 93 116 -
6 g8749.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 117 136 -
16 g8749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 137 159 -
12 g8749.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 160 217 -
15 g8749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 218 238 -
9 g8749.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 239 249 -
18 g8749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 250 269 -
11 g8749.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 270 280 -
13 g8749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 281 303 -
8 g8749.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 304 328 -
25 g8749.t11 SMART SM00014 acid_phosph_2 146 296 9.9E-38
4 g8749.t11 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 49 296 3.79E-26
21 g8749.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 49 71 -
24 g8749.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 91 113 -
23 g8749.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 218 240 -
20 g8749.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 255 274 -
22 g8749.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 281 303 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042577 lipid phosphatase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values