Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g8749 | g8749.t8 | TTS | g8749.t8 | 32790268 | 32790268 |
chr_2 | g8749 | g8749.t8 | isoform | g8749.t8 | 32790384 | 32792993 |
chr_2 | g8749 | g8749.t8 | exon | g8749.t8.exon1 | 32790384 | 32790538 |
chr_2 | g8749 | g8749.t8 | cds | g8749.t8.CDS1 | 32790384 | 32790538 |
chr_2 | g8749 | g8749.t8 | exon | g8749.t8.exon2 | 32790599 | 32790928 |
chr_2 | g8749 | g8749.t8 | cds | g8749.t8.CDS2 | 32790599 | 32790928 |
chr_2 | g8749 | g8749.t8 | exon | g8749.t8.exon3 | 32791015 | 32791189 |
chr_2 | g8749 | g8749.t8 | cds | g8749.t8.CDS3 | 32791015 | 32791189 |
chr_2 | g8749 | g8749.t8 | exon | g8749.t8.exon4 | 32791246 | 32791397 |
chr_2 | g8749 | g8749.t8 | cds | g8749.t8.CDS4 | 32791246 | 32791397 |
chr_2 | g8749 | g8749.t8 | exon | g8749.t8.exon5 | 32791460 | 32791634 |
chr_2 | g8749 | g8749.t8 | cds | g8749.t8.CDS5 | 32791460 | 32791634 |
chr_2 | g8749 | g8749.t8 | exon | g8749.t8.exon6 | 32792830 | 32792993 |
chr_2 | g8749 | g8749.t8 | TSS | g8749.t8 | 32792996 | 32792996 |
>g8749.t8 Gene=g8749 Length=1151
CATTTGACAGCATTGAAACGACGCGGCAGTTGACATTTTAGCTTTAAAAAGTGCCTATAT
TTTTCAATTTTTTCTCTTTAAACTGCTTAAAAGTTGTCGAGATTACTACAAAAAGTTCAA
AAATTTTAGTGAAAATTTAAAAATTAAGAAAAAAACAAGAAAAAATGACAAACAGGCCCA
ATCGGTCAATACAAGCAATACAAGAAGAAGCGACTGAAAACAGCCCATTAAACAATCGAC
CTGTATCTACAATTGATAATTCAAACAAATTCACAATGGATGCTGAAACAAAACGAATAT
TGACAAAAATTGCTATTGATGTAATTCTTTTAGGCTCTGTTGGCTTTCCTGTTCTGGCAT
ATTTCCTCTTTGGAGTTCCTTATGAACGTGGCTTTTTCTGTGATGATCAATCTTTGATGT
ATCCGTTTCATGATTCAACTGTAACAAGTGCAATGTTATATAGTTTTGGTTTTGGTATAC
CTACAATTTGCATTCTCATAATTGAATACTTAAGATGGAGGCTTAATATGGAACCTGAAA
GAGAACTGAAACTTTTTGGTCGTTCAATCCCCGTTTGGGTTATAAATGCATACAGATTTA
TAGGCATTCTTCTCTTTGGAGCTGCTTGCAGTCAATTGATAACTGATATTGCAAAATATA
CAATTGGTCGATTACGTCCTCATTTCTTAAGTGTTTGCCAACCGATTATGCCTGATGGAA
CTAATTGCTCGGATATAATAAATCACAACAAATACATCATTGATTTCACATGCAGTAATG
AAAATGCTTCAAAAAGGAAGTTAAAAGAAATGAGATTGAGTTTTCTAAGTGGACATAGTT
CATTTAGTATGTACACGATGGTCTATGCTGCTCTTTATATTCATAGCCGCATGGAATGGA
AAGGATCAAAGTTATTTAAACATTTTCTTCAATTTATATTTATTGCATTGGCATGGTATA
CAGCATTATCAAGAGTCAGCAATTATAAGCATCACTGGTCCGATGTGATGGCGGGTTCCA
TTCAAGGTCTATTTGTTTCATTGTTAATCGTCTTCGGTGTTTCTGGTCTATTCAAAAATA
AATTCAAAATTGTTGAACAACCAAAAGGATCACGTTATGAGTTAAACTCGCATAGTACCA
GAAGCAATTAG
>g8749.t8 Gene=g8749 Length=328
MTNRPNRSIQAIQEEATENSPLNNRPVSTIDNSNKFTMDAETKRILTKIAIDVILLGSVG
FPVLAYFLFGVPYERGFFCDDQSLMYPFHDSTVTSAMLYSFGFGIPTICILIIEYLRWRL
NMEPERELKLFGRSIPVWVINAYRFIGILLFGAACSQLITDIAKYTIGRLRPHFLSVCQP
IMPDGTNCSDIINHNKYIIDFTCSNENASKRKLKEMRLSFLSGHSSFSMYTMVYAALYIH
SRMEWKGSKLFKHFLQFIFIALAWYTALSRVSNYKHHWSDVMAGSIQGLFVSLLIVFGVS
GLFKNKFKIVEQPKGSRYELNSHSTRSN
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
19 | g8749.t8 | CDD | cd03384 | PAP2_wunen | 142 | 296 | 6.49639E-70 |
5 | g8749.t8 | Gene3D | G3DSA:1.20.144.10 | - | 53 | 326 | 8.7E-32 |
2 | g8749.t8 | PANTHER | PTHR10165 | LIPID PHOSPHATE PHOSPHATASE | 44 | 305 | 1.1E-94 |
3 | g8749.t8 | PANTHER | PTHR10165:SF173 | FI04477P-RELATED | 44 | 305 | 1.1E-94 |
1 | g8749.t8 | Pfam | PF01569 | PAP2 superfamily | 148 | 297 | 9.5E-26 |
7 | g8749.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 52 | - |
14 | g8749.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 53 | 73 | - |
10 | g8749.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 74 | 92 | - |
17 | g8749.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 116 | - |
6 | g8749.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 117 | 136 | - |
16 | g8749.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 137 | 159 | - |
12 | g8749.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 160 | 217 | - |
15 | g8749.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 218 | 238 | - |
9 | g8749.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 239 | 249 | - |
18 | g8749.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 269 | - |
11 | g8749.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 270 | 280 | - |
13 | g8749.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 303 | - |
8 | g8749.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 304 | 328 | - |
25 | g8749.t8 | SMART | SM00014 | acid_phosph_2 | 146 | 296 | 9.9E-38 |
4 | g8749.t8 | SUPERFAMILY | SSF48317 | Acid phosphatase/Vanadium-dependent haloperoxidase | 49 | 296 | 3.79E-26 |
21 | g8749.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 71 | - |
24 | g8749.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 113 | - |
23 | g8749.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 218 | 240 | - |
20 | g8749.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 274 | - |
22 | g8749.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 303 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0042577 | lipid phosphatase activity | MF |
GO:0006644 | phospholipid metabolic process | BP |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.