General information for g877.t35
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 2-hydroxyacylsphingosine 1-beta-galactosyltransferase.
Parent gene
- The parent gene g877 is located on chr_3: 6619998..6629641 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g877 | g877.t35 | TSS | g877.t35 | 6618107 | 6618107 |
| chr_3 | g877 | g877.t35 | isoform | g877.t35 | 6619047 | 6620155 |
| chr_3 | g877 | g877.t35 | exon | g877.t35.exon1 | 6619047 | 6619626 |
| chr_3 | g877 | g877.t35 | cds | g877.t35.CDS1 | 6619091 | 6619626 |
| chr_3 | g877 | g877.t35 | exon | g877.t35.exon2 | 6619684 | 6620155 |
| chr_3 | g877 | g877.t35 | cds | g877.t35.CDS2 | 6619684 | 6620155 |
| chr_3 | g877 | g877.t35 | TTS | g877.t35 | 6620992 | 6620992 |
Sequences
>g877.t35 Gene=g877 Length=1052
CACCATCATATGTACCAAGACCGTATGTTCAATATTCAGATAAAATGTCATTCAGAGAAC
GACTTATGAATACATTTTACGCTCACATTGAAGACATAGTTTATGAATTCATCATAAAAC
CAAACCAAAGAAGACTTTATGAGAAATATTTCCCAAATGCAACTAAAACATTTGACGAGA
TGTACAAAGATACTTCAATGATTTTCATGAACACTCACATTTCACTGACAGCACCTCGTC
CGTATTTACCAAGTTTTGTAGAAATTGGAGGAATTCATATTCAACCTGTAAAAAAGTTGC
CAAAAGTATTTCAAAATTTCTTAGATTCAGCGACTGATGGTGTGATTTTATTTTCAATGG
GTTCAGTAATTCGATCATACCAATGGCCAGTTGAGAAACGTGAAGCATTCGTTAAAGTTT
TTGGCAAATTGAAGCAAAAAGTACTTTGGAAATATGAAAATGACACATTACCAAATAAAC
CTGATAATGTTATGATTAGTTCATGGTTGCCACAAAGAGACATTTTGGCTCATCCTAATG
TAAAAGCTTATATCTGTCATGGCGGACTATTAGGAACAACTGAAGCAGTTTATGAAGGAG
TCCCTGTGCTTGGTATACCAATATTCGGAGACCAAAAGACAATCATGGCTAAAGCAGTTA
CTCGTGGCTATGGATTGCAAGTTTATTTCAAAGATGTTTCTGAAGAAACAATTGGTTCTG
CCTTGGATGAATTATTGAACAATCCAATGTACAAAGAAAATGCAAAAATTATTTCAACAC
GCTTTAAAGATCGACCAATGACACCACAACAATCAGTAGTTTATTGGACTGAATATGTTC
ATAGACACGGTGGAGCACCACACTTGAAAGCTGCTGGAAATGATTTGGATTTTATCGCAT
TTCATATGATTGATGTTTATGCTGTTTTGTTTTTTGGTGGAATTTCTTTCATTTTCATTA
ATTATTTGATTATTAAGTGGATTTTTATGAAATTTTCTGGAAAACCAAAGAAGACAGAAA
AGAAAAATGAGAAGAAGCTTAAAAAGAAATAA
>g877.t35 Gene=g877 Length=335
MSFRERLMNTFYAHIEDIVYEFIIKPNQRRLYEKYFPNATKTFDEMYKDTSMIFMNTHIS
LTAPRPYLPSFVEIGGIHIQPVKKLPKVFQNFLDSATDGVILFSMGSVIRSYQWPVEKRE
AFVKVFGKLKQKVLWKYENDTLPNKPDNVMISSWLPQRDILAHPNVKAYICHGGLLGTTE
AVYEGVPVLGIPIFGDQKTIMAKAVTRGYGLQVYFKDVSEETIGSALDELLNNPMYKENA
KIISTRFKDRPMTPQQSVVYWTEYVHRHGGAPHLKAAGNDLDFIAFHMIDVYAVLFFGGI
SFIFINYLIIKWIFMKFSGKPKKTEKKNEKKLKKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g877.t35 | CDD | cd03784 | GT1_Gtf-like | 29 | 261 | 8.40534E-52 |
| 5 | g877.t35 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 80 | 249 | 2.3E-44 |
| 2 | g877.t35 | PANTHER | PTHR48043:SF60 | UDP-GLUCURONOSYLTRANSFERASE | 1 | 303 | 4.7E-103 |
| 3 | g877.t35 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 1 | 303 | 4.7E-103 |
| 1 | g877.t35 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 1 | 323 | 1.7E-74 |
| 7 | g877.t35 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 290 | - |
| 8 | g877.t35 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 291 | 314 | - |
| 6 | g877.t35 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 315 | 335 | - |
| 11 | g877.t35 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 154 | 197 | - |
| 4 | g877.t35 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 1 | 274 | 5.93E-81 |
| 10 | g877.t35 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 293 | 315 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
