Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UDP-glucuronosyltransferase 2B33.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g877 g877.t39 isoform g877.t39 6619585 6629641
chr_3 g877 g877.t39 exon g877.t39.exon1 6619585 6619626
chr_3 g877 g877.t39 exon g877.t39.exon2 6619684 6620301
chr_3 g877 g877.t39 cds g877.t39.CDS1 6619748 6620155
chr_3 g877 g877.t39 exon g877.t39.exon3 6629238 6629641
chr_3 g877 g877.t39 TTS g877.t39 6629930 6629930
chr_3 g877 g877.t39 TSS g877.t39 NA NA

Sequences

>g877.t39 Gene=g877 Length=1064
TGTAAAAGCTTATATCTGTCATGGCGGACTATTAGGAACAACTGAAGCAGTTTATGAAGG
AGTCCCTGTGCTTGGTATACCAATATTCGGAGACCAAAAGACAATCATGGCTAAAGCAGT
TACTCGTGGCTATGGATTGCAAGTTTATTTCAAAGATGTTTCTGAAGAAACAATTGGTTC
TGCCTTGGATGAATTATTGAACAATCCAATGTACAAAGAAAATGCAAAAATTATTTCAAC
ACGCTTTAAAGATCGACCAATGACACCACAACAATCAGTAGTTTATTGGACTGAATATGT
TCATAGACACGGTGGAGCACCACACTTGAAAGCTGCTGGAAATGATTTGGATTTTATCGC
ATTTCATATGATTGATGTTTATGCTGTTTTGTTTTTTGGTGGAATTTCTTTCATTTTCAT
TAATTATTTGATTATTAAGTGGATTTTTATGAAATTTTCTGGAAAACCAAAGAAGACAGA
AAAGAAAAATGAGAAGAAGCTTAAAAAGAAATAAACAAGAAATAATAGAATATTTCAACC
ATTAGCTGTGACCAGTAAAATTTCAATCAGGGAACTGAGTTCTGTTCATATCGAATGAAA
AATATTTTTGAACAAATTTTAAAAGAAATCTCTGAATTCATTTATTTATTTACATTTAAG
ATTATGACTAATATTTTGCCACAATTAAAAACTTAGTTCATTAAAAAGTGTTCCTTACAT
TTTCATTATTTTATATTTTATTATTTCTTGAAAAAATTATTTAAGTTCAAAATAATTTCC
TTAAAATCCATGTAAAGCTATAAACAGTGATATTTTCTTTTACTTTTGCTCAATTAAATT
TTATTATTATTTTTCTAGCTATATTTTCATTTTAATTAAAGTTCATTTTCCTAAAAAAAT
TTTGGCAAAAGAAATCATGAATTTTCAAAAAACATGAAGAATGAGAGTATTGTAAATTTA
ATGAAAAACTCTACGTTGATTTTTATTTTGAATATTGAAGGAACAATTTAGAAATTAAGT
TTTAAATTTTCTAAAAATAAAACTTTTTCCTTTTGATTAATTTA

>g877.t39 Gene=g877 Length=135
MAKAVTRGYGLQVYFKDVSEETIGSALDELLNNPMYKENAKIISTRFKDRPMTPQQSVVY
WTEYVHRHGGAPHLKAAGNDLDFIAFHMIDVYAVLFFGGISFIFINYLIIKWIFMKFSGK
PKKTEKKNEKKLKKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g877.t39 PANTHER PTHR48043:SF60 UDP-GLUCURONOSYLTRANSFERASE 1 104 2.0E-24
3 g877.t39 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 1 104 2.0E-24
1 g877.t39 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 3 123 6.8E-26
7 g877.t39 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 90 -
8 g877.t39 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 114 -
6 g877.t39 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 115 135 -
5 g877.t39 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 4 74 4.04E-15
4 g877.t39 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 93 115 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed