Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UDP-glucuronosyltransferase 2B33.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g877 g877.t40 isoform g877.t40 6619684 6620998
chr_3 g877 g877.t40 exon g877.t40.exon1 6619684 6620998
chr_3 g877 g877.t40 cds g877.t40.CDS1 6619748 6620155
chr_3 g877 g877.t40 TTS g877.t40 6620992 6620992
chr_3 g877 g877.t40 TSS g877.t40 NA NA

Sequences

>g877.t40 Gene=g877 Length=1315
TGAAGCAGTTTATGAAGGAGTCCCTGTGCTTGGTATACCAATATTCGGAGACCAAAAGAC
AATCATGGCTAAAGCAGTTACTCGTGGCTATGGATTGCAAGTTTATTTCAAAGATGTTTC
TGAAGAAACAATTGGTTCTGCCTTGGATGAATTATTGAACAATCCAATGTACAAAGAAAA
TGCAAAAATTATTTCAACACGCTTTAAAGATCGACCAATGACACCACAACAATCAGTAGT
TTATTGGACTGAATATGTTCATAGACACGGTGGAGCACCACACTTGAAAGCTGCTGGAAA
TGATTTGGATTTTATCGCATTTCATATGATTGATGTTTATGCTGTTTTGTTTTTTGGTGG
AATTTCTTTCATTTTCATTAATTATTTGATTATTAAGTGGATTTTTATGAAATTTTCTGG
AAAACCAAAGAAGACAGAAAAGAAAAATGAGAAGAAGCTTAAAAAGAAATAAACAAGAAA
TAATAGAATATTTCAACCATTAGCTGTGACCAGTAAAATTTCAATCAGGGAACTGAGTTC
TGTTCATATCGAATGAAAAATATTTTTGAACAAATTTTAAAAGAAATCTCTGAATTCATT
TATTTATTTACATTTAAGATTATGGCTTAATATTTTGCAACAATTAAAAACTTAGTTCAT
TAAAAAGTGTTCCTTACATTTTTCATTATTTTATATTTTATTATTTCTTGAAAAATTATT
TAAGTTCAAAATAATTTCCTTAAAATTCCATGTAAAGCTATAAACAGTGATATTTTCTTT
TACTTTTGCTCAATTAAATTTTATTATTTATTTTCTAGCTATATTTTCATTTTAATTAAA
GTTCATTTTCCTAAAAAAATTTTTGGCAAAAGAAATCATGAAATTTTCAAAAAACATGAA
AGAATGAGAGTGATTGTAAATTTAATGAAAAACTCTAGGTGATTTTTATTGAATATTGAA
GGAACAATTTAGAAATTAAGTTTTAAATTTTCTAAAAATAAAACTTTTTCCTTTTGATTA
ATTTATCAAAAAAAAAAATTTATTGAATCAAAAACTTTTCAGACAGAATATTAAAATTAT
TTACACATCAGCTTAAGCAAAAAAGGAAAAGTTTATCATAAGTTAAATAAAAAATAAAAC
TTTCTCTTTTCAATCGTAGTCAAATAGTAGAAACTAAAATTCAATATTTATTCAGTCGTT
TTTAAAGAAAAATAAAAAAGAAAAATTGAATAAAATGATAAATTGCAACAAGCAATAAAT
TTTTTTTTCCATGCAATGATGTTGAAAAATAAATAAGATAAATTGTAATAAAATA

>g877.t40 Gene=g877 Length=135
MAKAVTRGYGLQVYFKDVSEETIGSALDELLNNPMYKENAKIISTRFKDRPMTPQQSVVY
WTEYVHRHGGAPHLKAAGNDLDFIAFHMIDVYAVLFFGGISFIFINYLIIKWIFMKFSGK
PKKTEKKNEKKLKKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g877.t40 PANTHER PTHR48043:SF60 UDP-GLUCURONOSYLTRANSFERASE 1 104 2.0E-24
3 g877.t40 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 1 104 2.0E-24
1 g877.t40 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 3 123 6.8E-26
7 g877.t40 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 90 -
8 g877.t40 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 114 -
6 g877.t40 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 115 135 -
5 g877.t40 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 4 74 4.04E-15
4 g877.t40 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 93 115 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values