General information for g877.t42
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g877 is located on chr_3: 6619998..6629641 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g877 | g877.t42 | isoform | g877.t42 | 6619856 | 6629641 |
| chr_3 | g877 | g877.t42 | exon | g877.t42.exon1 | 6619856 | 6620195 |
| chr_3 | g877 | g877.t42 | cds | g877.t42.CDS1 | 6619901 | 6620155 |
| chr_3 | g877 | g877.t42 | exon | g877.t42.exon2 | 6629137 | 6629641 |
| chr_3 | g877 | g877.t42 | TTS | g877.t42 | 6629930 | 6629930 |
| chr_3 | g877 | g877.t42 | TSS | g877.t42 | NA | NA |
Sequences
>g877.t42 Gene=g877 Length=845
AAAGAAAATGCAAAAATTATTTCAACACGCTTTAAAGATCGACCAATGACACCACAACAA
TCAGTAGTTTATTGGACTGAATATGTTCATAGACACGGTGGAGCACCACACTTGAAAGCT
GCTGGAAATGATTTGGATTTTATCGCATTTCATATGATTGATGTTTATGCTGTTTTGTTT
TTTGGTGGAATTTCTTTCATTTTCATTAATTATTTGATTATTAAGTGGATTTTTATGAAA
TTTTCTGGAAAACCAAAGAAGACAGAAAAGAAAAATGAGAAGAAGCTTAAAAAGAAATAA
ACAAGAAATAATAGAATATTTCAACCATTAGCTGTGACCATAAAATTTTAATCAGGAACT
TATTCTGTTCATATCGAATGAAAAATATTTTGAACAAATTTTTAAAGAAATCTCTGAATT
CATTTATTTATTTATATTAAGATTATGACTAATATTTTGCCACAATTAAAAACTTAGTTC
ATTAAAAAGTGTTCCTTACATTTTCATTATTTTATATTTTATTATTTCTTGAAAAAATTA
TTTAAGTTCAAAATAATTTCCTTAAAATCCATGTAAAGCTATAAACAGTGATATTTTCTT
TTACTTTTGCTCAATTAAATTTTATTATTATTTTTCTAGCTATATTTTCATTTTAATTAA
AGTTCATTTTCCTAAAAAAATTTTGGCAAAAGAAATCATGAATTTTCAAAAAACATGAAG
AATGAGAGTATTGTAAATTTAATGAAAAACTCTACGTTGATTTTTATTTTGAATATTGAA
GGAACAATTTAGAAATTAAGTTTTAAATTTTCTAAAAATAAAACTTTTTCCTTTTGATTA
ATTTA
>g877.t42 Gene=g877 Length=84
MTPQQSVVYWTEYVHRHGGAPHLKAAGNDLDFIAFHMIDVYAVLFFGGISFIFINYLIIK
WIFMKFSGKPKKTEKKNEKKLKKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g877.t42 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 2 | 72 | 6.7E-12 |
| 4 | g877.t42 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 39 | - |
| 5 | g877.t42 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 63 | - |
| 3 | g877.t42 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 64 | 84 | - |
| 2 | g877.t42 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 59 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed