General information for g8800.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family A member 3.
Parent gene
- The parent gene g8800 is located on chr_2: 33194475..33195484 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8800 | g8800.t1 | TSS | g8800.t1 | 33189902 | 33189902 |
| chr_2 | g8800 | g8800.t1 | isoform | g8800.t1 | 33189929 | 33195107 |
| chr_2 | g8800 | g8800.t1 | exon | g8800.t1.exon1 | 33189929 | 33190318 |
| chr_2 | g8800 | g8800.t1 | cds | g8800.t1.CDS1 | 33189929 | 33190318 |
| chr_2 | g8800 | g8800.t1 | exon | g8800.t1.exon2 | 33190584 | 33190850 |
| chr_2 | g8800 | g8800.t1 | cds | g8800.t1.CDS2 | 33190584 | 33190850 |
| chr_2 | g8800 | g8800.t1 | exon | g8800.t1.exon3 | 33190908 | 33192291 |
| chr_2 | g8800 | g8800.t1 | cds | g8800.t1.CDS3 | 33190908 | 33192291 |
| chr_2 | g8800 | g8800.t1 | exon | g8800.t1.exon4 | 33192355 | 33193650 |
| chr_2 | g8800 | g8800.t1 | cds | g8800.t1.CDS4 | 33192355 | 33193650 |
| chr_2 | g8800 | g8800.t1 | exon | g8800.t1.exon5 | 33193704 | 33194204 |
| chr_2 | g8800 | g8800.t1 | cds | g8800.t1.CDS5 | 33193704 | 33194204 |
| chr_2 | g8800 | g8800.t1 | exon | g8800.t1.exon6 | 33194263 | 33195107 |
| chr_2 | g8800 | g8800.t1 | cds | g8800.t1.CDS6 | 33194263 | 33195107 |
| chr_2 | g8800 | g8800.t1 | TTS | g8800.t1 | 33195485 | 33195485 |
Sequences
>g8800.t1 Gene=g8800 Length=4683
ATGTCGTTTGATAAATTAAAAATTTTGCTGTGGAAAAATTGGATTTTACAAACGCGAAGA
CCAATTTCTGCCATTTTTCAATTATTATTTCCGATTGTAGTTGTAATTCTTACAACATGG
GCACGAAATTCTTTTGGTGGTGAATATGGAGTTTTCACAAAAGTTAAAGCTAATGAATAT
AATTTCACAAGTCTATCAGAGTGTACTTTTGAAAATAAACCAATAACAAAAGTGTTTTTT
GCTCCAAATTTTGAAGCATATAGAAATTTGGTTGAAATTTCATTTGAAAATTTGGAAATT
GTTGGTTTTAACAATAGTCGTGAAATTTGGGAGGAAATCGACAAATTGGATGATCAAATT
GGAATAATTTTATTGTCAAGTGACTCAGAGGTGACAAACACACTACCGAAAAATATAACA
CATTCAATTTCTATTCGATTTCGATATGCTGATCGAGTTTGTGAATTATACCTTCAACAT
GCTTTGGAAAGAGGATTCATTAAATCATTAGCTGCTAATTCTAATTTAGAAGATGTTATT
GTCAAGAATTTTCCTTATGAAGAGCAATTTAAACAAATATTTACTGAAGTAATAATTCAT
ATACTTCCATTATTTTTGGTCTTCAGTATGTTTGCAACAGTTCAAAGTGTGATCAAAAGT
GTAGCATCAGAACGTGAAAGTAAAATGAAAGAACTAATGAAAATTATGGGACTTTCATCA
GTTCTTCATTGGTCAGCGTGGTTTATAAAATGTATCATAATGTCAACAATATCTTATACA
GTTGTGACACTTTTCCTATGCGTAGCAATCATTGGAAATGAAGCAATTTTCCAACTTAGC
AATTTCTTTCTTATTTGGCTTTTCTTTTTCCTCTATTGTATTGGTGTAATTACATTCTGT
TTTATGGTCAGCACAATCTTTACAAAAGCAACAGTTGCTACAAATGTTGGTTTGATGCTT
TTCTTCTCAACTTATGTTCCCTATTATGTTTATGGAACAAACTTTGAGACGCTAAATCAT
ATTGTAAAATGGTTTTTTTGCATTCCAATCAACACATCACTTGGTCAAGGAATTTCAATG
GTATTAAATTTGGAATTGAACAAACAAGGCATCACTTTTTCAAATCTATTTACGCAAGTT
AATGGATTTAATTTTACATTCTTTGAAATTTTAATGATTATGATAATTGCAAGTATGATT
CATATTTTGATAATGACTTATCTTGAACTCGTCTTCCCTGGTGACGTTGGAGTTGCAAAG
CCATGGCATTTTCCTTTTACATTTTGTTTTGATTCGATGAGAAACAATCATAAAAATGCA
CACAATTATACAAACACTGATAATGGCAATATTTTTATTTCAAATGATGATATAGAAGAA
GAACCAAAGCATTTAAATGTGAAAGTTCGTATTAAAAACTTAACAAAAATTTTCGGCAAA
TATAAAGCAGTCAATAATCTTAGTTTGAATATTTTTGAAGATCAAATAACTGTTTTACTG
GCACACAATGGTGGAGGTAAGACGACAACTATGAATATGCTGATTGGAATGATTCCACCA
TCATTTGGTACTGCTTATATTAATGATTATGATATTACAACAGACATTCAAAATGCAAGA
AAATCATTAGGCATTTGTCCACAACATAATATTTTGTTTGCTGATTTGACTGTTCGTGAA
CATATAATTTTCTTCAGTCGACTTAAAGGAATGACAAATAAAAAAGAAATTGATGAAGAA
GTAATCAAGTATGTGAAAATGATGGACTTTGTGGACAAAAAAGATGCAAGAAGCAAAACA
TTGTCTGGAGGTCAACAGAGAAAATTGTCAATAGCAAATGCTCTCTGTGGTGGATCAACT
TTTGTAGTTTTGGATGAACCAACAAGTGGTTTAGATGTCACAGCTAGACGAAAATTATGG
GATTTGCTTATTGAATCAAAAAAAGGACGATCAATATTATTAAGTACTCACTATTTGAAT
GAGGCTGATGTTTTAGGTGACAGAATTGCGATCATGAATGAAGGACAACTTAAAACTATT
GGAACTTCATTTTTTTTGAAAAAGAAATTTGGTTCAGGCTATCAATTGATTATTATAAAA
AAGCCAAACTTTAATGTTGATAAAATTTTAAATGTTTTAAAACAATATGCACCAGATGCT
TCAGTGAAATCAAATGAACAATTAGAAGCTATTTTTATTCTAAGTGAAGAATATTTGGAT
AAATTTGACAAAATTTTTAAACATCTTGAAGACGATTCAATTAATTTAGGCATCGAAAGC
TTTGGTTGTTCATTGACAACTTTAGAAGAAGTTTTTCTTAAAGTTGGTGTTGAATCAAAT
GAACAAAATGGAAATGGACCTGAAGCTATTGTTAAAATTGATGACCTTTTATCTTTCTCA
AAAGTATCACAATTTACTCTCTTTATTAACCAAATCTATGCCATGATTTTGAAGAAAATT
CATTTCACAAGGAGAAATTATGCAGCAATAATAATGTTGACAATTTTGACTATTTGGTTA
ACATTTGTTCTTTTAGCTGCACCCGTCCAACTTGGTGAGGGTACGGTTAATATGGATACA
AAACTAACTGGATTGGTATCATCAAAAAATTCAGAATCAAATTTCATTGAAATTTACAAA
AATTTCTTCAATGAATCAAATTTTTTTATAACTGACAAGAGCATTTTTGATTATATTTAT
CAGAACTTCTTGAGAAATAATCTGAAATATGAAATTGGTGTTGAATTAGATGAGAATAAA
TCAGTAACCAGTGTGTATTATAATCCAAATTCGTACTATAACTCTTTATATGTTGCATTA
AATTTTTATCATCGAGCTATTTTAAAAGAACTGACAAATGCTGATCATGACATTAAACTT
TTGTACAACTATTATGAATCAATATTTACAAACGATGATAATGATTATGAAGTCATTTAT
GATTTATCTGATAGAAATGTTTGGAAAGATATCACAGTGTATTTTTTGTTCTTCTTTCTT
CTAACATATTGGCCTGTAATTCATATGACATTGAAAATTAAGGAACGTGTAACGAAAGCT
AAATTACTACAATTTATTAGTGGAGCTAACAAGTTAATTTTTACATTCACTTCCTTTGTA
CTTGATGTCATCATTTTTCTATCCATCATGTTTATAATTTATGGTGTAGTTGCAGCACTT
GATAGACCTGGTTTCAACACTCTTAATGATGCTGCTGTTTATTTAACAATCTTTACTTTT
TATGCTATTAACATTATTCCACTAATTTATTTGATGTCATTTCTTTTTAAAAAGCACACT
ACTGGAGAAGCAGTTATGCAATTGATTCCTGTGGGATTTGCTATTTTATATTTGGCTTAT
GCAATTTTAAACACCATATCACTTGAAATTGTTGGAACAATTATTTACTGGATCGGAATT
TTCTTTGCACCATTTTCATTGGTTGATTGTTTTGTGAAAATTATGGACACTGGATTATTT
GGTGGAGAATTTTGGAAATTTGGTGACAAAGGAATATTTTTGAATTTGACACTTATGGCA
GTTGGTGGAGTAATATTTTTAACAATTGTGCTTTTGAAAGACTTTTTATTCTTCATGTGG
ATTCGTTACAAGTTTTTCAATAAATCAAAGCATTTGGGAACATTAAATTCACAATTAGAT
GATGATGTCCTTAATGAAATTCAGAGAGTGAAAAACAAGACACCTTCACAAATTGTTGAC
AGCAATTTAGTGTTAAAAAATTTGTCAAAGGTTTATGGAAAAAATTTAGCAGTAAATCAA
TTGTATGTTGGTGTTGAAAAAGCAGAAATTTTTGGACTTCTTGGTGTTAATGGATCTGGT
AAAACCAGTGTTTTTAAAATGTTAACAGGAGATGAAATAATTTCTTCTGGAAATGCTTGG
ATTCATGGCAATAGTTTAATAGGTCAACTTTCATCTGTTTATAAAGAAATTGGTTATTGT
CCTCAGTATGATGCATTACTTCCTGATTTGAGTGGCAGAGAAACTTTAAAAATATTTTGT
CTTCTTCGTGGTATTCCACGTAATGAAATCAATCAAGTAATTGAAACATTTGCACATGAA
TTGGATTTTTATAAGCATCTTGATAAGAAAATAAGTGAATTTAGTGGTGGAAATAGACGA
AAATTGAGCACAACAATTTCATTATTGGGAAATTTATCTCTGATCTTTCTTGATGAATGT
TCAAGTGGAATTGATGCAAAAGCAACTCGTCAATTATGGAATATCATCAATAAAACTAAA
AATGCAGGAAAATCAATCATTATTACTTCACATAGTATGCAAGAATGTGAAGTTTTATGC
AATAAACTTGCAATTATGGTTGATGGATCATTTGAATGTCTTGGATCAATTCAACATTTG
AAAAATAAATTTTCTAAAGGTTATGTTCTTAAAATTATGATGTCAAAGAAAGAAGATGAA
GAACATTTTAGAGCAATTGAAAGTAGAGTTATGGCAAAATTTCCAAATGCACAACTTAAA
GAAAGATTCATGAGACTTTTGACTTTTCATATTGACATACCTGAACTTAAATGGTCAGAA
GTTTTTGCTTATTTAGCAAGAATGAAGGAAGAATTGGGAATTGATGATTATACCATGACA
CAAGCATCACTTGAGTCAGTATTTTTATTCTTTAGCAAACGAGGAAAACAAAAAGATGAA
TAA
>g8800.t1 Gene=g8800 Length=1560
MSFDKLKILLWKNWILQTRRPISAIFQLLFPIVVVILTTWARNSFGGEYGVFTKVKANEY
NFTSLSECTFENKPITKVFFAPNFEAYRNLVEISFENLEIVGFNNSREIWEEIDKLDDQI
GIILLSSDSEVTNTLPKNITHSISIRFRYADRVCELYLQHALERGFIKSLAANSNLEDVI
VKNFPYEEQFKQIFTEVIIHILPLFLVFSMFATVQSVIKSVASERESKMKELMKIMGLSS
VLHWSAWFIKCIIMSTISYTVVTLFLCVAIIGNEAIFQLSNFFLIWLFFFLYCIGVITFC
FMVSTIFTKATVATNVGLMLFFSTYVPYYVYGTNFETLNHIVKWFFCIPINTSLGQGISM
VLNLELNKQGITFSNLFTQVNGFNFTFFEILMIMIIASMIHILIMTYLELVFPGDVGVAK
PWHFPFTFCFDSMRNNHKNAHNYTNTDNGNIFISNDDIEEEPKHLNVKVRIKNLTKIFGK
YKAVNNLSLNIFEDQITVLLAHNGGGKTTTMNMLIGMIPPSFGTAYINDYDITTDIQNAR
KSLGICPQHNILFADLTVREHIIFFSRLKGMTNKKEIDEEVIKYVKMMDFVDKKDARSKT
LSGGQQRKLSIANALCGGSTFVVLDEPTSGLDVTARRKLWDLLIESKKGRSILLSTHYLN
EADVLGDRIAIMNEGQLKTIGTSFFLKKKFGSGYQLIIIKKPNFNVDKILNVLKQYAPDA
SVKSNEQLEAIFILSEEYLDKFDKIFKHLEDDSINLGIESFGCSLTTLEEVFLKVGVESN
EQNGNGPEAIVKIDDLLSFSKVSQFTLFINQIYAMILKKIHFTRRNYAAIIMLTILTIWL
TFVLLAAPVQLGEGTVNMDTKLTGLVSSKNSESNFIEIYKNFFNESNFFITDKSIFDYIY
QNFLRNNLKYEIGVELDENKSVTSVYYNPNSYYNSLYVALNFYHRAILKELTNADHDIKL
LYNYYESIFTNDDNDYEVIYDLSDRNVWKDITVYFLFFFLLTYWPVIHMTLKIKERVTKA
KLLQFISGANKLIFTFTSFVLDVIIFLSIMFIIYGVVAALDRPGFNTLNDAAVYLTIFTF
YAINIIPLIYLMSFLFKKHTTGEAVMQLIPVGFAILYLAYAILNTISLEIVGTIIYWIGI
FFAPFSLVDCFVKIMDTGLFGGEFWKFGDKGIFLNLTLMAVGGVIFLTIVLLKDFLFFMW
IRYKFFNKSKHLGTLNSQLDDDVLNEIQRVKNKTPSQIVDSNLVLKNLSKVYGKNLAVNQ
LYVGVEKAEIFGLLGVNGSGKTSVFKMLTGDEIISSGNAWIHGNSLIGQLSSVYKEIGYC
PQYDALLPDLSGRETLKIFCLLRGIPRNEINQVIETFAHELDFYKHLDKKISEFSGGNRR
KLSTTISLLGNLSLIFLDECSSGIDAKATRQLWNIINKTKNAGKSIIITSHSMQECEVLC
NKLAIMVDGSFECLGSIQHLKNKFSKGYVLKIMMSKKEDEEHFRAIESRVMAKFPNAQLK
ERFMRLLTFHIDIPELKWSEVFAYLARMKEELGIDDYTMTQASLESVFLFFSKRGKQKDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 45 | g8800.t1 | CDD | cd03263 | ABC_subfamily_A | 469 | 687 | 1.23868E-101 |
| 44 | g8800.t1 | CDD | cd03263 | ABC_subfamily_A | 1243 | 1461 | 1.5592E-92 |
| 11 | g8800.t1 | Gene3D | G3DSA:3.40.50.300 | - | 455 | 700 | 7.1E-59 |
| 12 | g8800.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1232 | 1482 | 3.4E-52 |
| 5 | g8800.t1 | PANTHER | PTHR19229:SF36 | ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B | 4 | 1116 | 0.0 |
| 7 | g8800.t1 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 4 | 1116 | 0.0 |
| 6 | g8800.t1 | PANTHER | PTHR19229:SF36 | ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B | 1122 | 1550 | 0.0 |
| 8 | g8800.t1 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 1122 | 1550 | 0.0 |
| 1 | g8800.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 25 | 402 | 1.7E-23 |
| 4 | g8800.t1 | Pfam | PF00005 | ABC transporter | 484 | 629 | 1.3E-25 |
| 2 | g8800.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 832 | 1191 | 1.2E-20 |
| 3 | g8800.t1 | Pfam | PF00005 | ABC transporter | 1259 | 1401 | 9.2E-19 |
| 14 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 35 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 41 | - |
| 24 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 42 | 196 | - |
| 39 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 221 | - |
| 16 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 222 | 240 | - |
| 34 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 271 | - |
| 28 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 272 | 282 | - |
| 40 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 283 | 303 | - |
| 17 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 304 | 309 | - |
| 37 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 310 | 330 | - |
| 22 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 331 | 341 | - |
| 41 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 364 | - |
| 13 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 365 | 384 | - |
| 30 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 408 | - |
| 26 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 409 | 795 | - |
| 32 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 796 | 816 | - |
| 15 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 817 | 827 | - |
| 43 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 828 | 849 | - |
| 23 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 850 | 990 | - |
| 38 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 991 | 1011 | - |
| 19 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1012 | 1031 | - |
| 42 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1032 | 1060 | - |
| 25 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1061 | 1071 | - |
| 31 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1072 | 1096 | - |
| 18 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1097 | 1107 | - |
| 33 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1108 | 1128 | - |
| 27 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1129 | 1133 | - |
| 29 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1134 | 1152 | - |
| 20 | g8800.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1153 | 1172 | - |
| 36 | g8800.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1173 | 1201 | - |
| 21 | g8800.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1202 | 1560 | - |
| 59 | g8800.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 601 | 615 | - |
| 63 | g8800.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 469 | 699 | 21.375 |
| 62 | g8800.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1243 | 1473 | 16.46 |
| 60 | g8800.t1 | SMART | SM00382 | AAA_5 | 493 | 690 | 8.6E-4 |
| 61 | g8800.t1 | SMART | SM00382 | AAA_5 | 1267 | 1464 | 1.0 |
| 10 | g8800.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 472 | 681 | 4.37E-55 |
| 9 | g8800.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1244 | 1469 | 1.92E-45 |
| 52 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 56 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 199 | 221 | - |
| 46 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 272 | - |
| 54 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 304 | - |
| 48 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 311 | 333 | - |
| 58 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 412 | - |
| 55 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 827 | 849 | - |
| 51 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 991 | 1011 | - |
| 50 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1032 | 1054 | - |
| 53 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1074 | 1096 | - |
| 57 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1108 | 1126 | - |
| 49 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1130 | 1152 | - |
| 47 | g8800.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1172 | 1191 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05648 (ATP-binding cassette, subfamily A (ABC1), member 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
