General information for g8800.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family A member 3.
Parent gene
- The parent gene g8800 is located on chr_2: 33194475..33195484 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8800 | g8800.t3 | isoform | g8800.t3 | 33194475 | 33195484 |
| chr_2 | g8800 | g8800.t3 | exon | g8800.t3.exon1 | 33194475 | 33195484 |
| chr_2 | g8800 | g8800.t3 | cds | g8800.t3.CDS1 | 33194721 | 33195107 |
| chr_2 | g8800 | g8800.t3 | TTS | g8800.t3 | 33195485 | 33195485 |
| chr_2 | g8800 | g8800.t3 | TSS | g8800.t3 | NA | NA |
Sequences
>g8800.t3 Gene=g8800 Length=1010
AATCAAGTAATTGAAACATTTGCACATGAATTGGATTTTTATAAGCATCTTGATAAGAAA
ATAAGTGAATTTAGTGGTGGAAATAGACGAAAATTGAGCACAACAATTTCATTATTGGGA
AATTTATCTCTGATCTTTCTTGATGAATGTTCAAGTGGAATTGATGCAAAAGCAACTCGT
CAATTATGGAATATCATCAATAAAACTAAAAATGCAGGAAAATCAATCATTATTACTTCA
CATAGTATGCAAGAATGTGAAGTTTTATGCAATAAACTTGCAATTATGGTTGATGGATCA
TTTGAATGTCTTGGATCAATTCAACATTTGAAAAATAAATTTTCTAAAGGTTATGTTCTT
AAAATTATGATGTCAAAGAAAGAAGATGAAGAACATTTTAGAGCAATTGAAAGTAGAGTT
ATGGCAAAATTTCCAAATGCACAACTTAAAGAAAGATTCATGAGACTTTTGACTTTTCAT
ATTGACATACCTGAACTTAAATGGTCAGAAGTTTTTGCTTATTTAGCAAGAATGAAGGAA
GAATTGGGAATTGATGATTATACCATGACACAAGCATCACTTGAGTCAGTATTTTTATTC
TTTAGCAAACGAGGAAAACAAAAAGATGAATAAAGAAGAAGAAATTCACTCGGGCGACAT
TTTTTCTATCGAGCAACAAATAAGTAACGAAAACCACATGTCACATGTGACAAAATGTCT
CTTGACATTTGAATTTTATAAAATTTTATATAATAATCATTTCGCTTAATAACAGTTTGA
TAAAGAATTGAATTTCAAGTATTTTGATATAAATATCAATAAATTTAATCAAGCATTTAA
CTCAGTAAAGTAACTTTTTCTAAATTTTGTAAATGTTTTGTTTACATTTTATGTCACTTT
TATAAATTTTATGTGACATATGTTGTGTGTCGAGGCAACTTGGAGCACTAAAAAATAATT
TTCGTTGTCCCTGTGATTTTTGTTTGTGATTAAATAAAAATTTATTTAAC
>g8800.t3 Gene=g8800 Length=128
MQECEVLCNKLAIMVDGSFECLGSIQHLKNKFSKGYVLKIMMSKKEDEEHFRAIESRVMA
KFPNAQLKERFMRLLTFHIDIPELKWSEVFAYLARMKEELGIDDYTMTQASLESVFLFFS
KRGKQKDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8800.t3 | PANTHER | PTHR19229:SF49 | ATP-BINDING CASSETTE SUB-FAMILY A MEMBER 7 | 1 | 123 | 0 |
| g8800.t3 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 1 | 123 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
