General information for g8824.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8824 is located on chr_2: 33369609..33373460 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8824 | g8824.t3 | isoform | g8824.t3 | 33368605 | 33370464 |
| chr_2 | g8824 | g8824.t3 | exon | g8824.t3.exon1 | 33368605 | 33369731 |
| chr_2 | g8824 | g8824.t3 | TTS | g8824.t3 | 33368609 | 33368609 |
| chr_2 | g8824 | g8824.t3 | cds | g8824.t3.CDS1 | 33369609 | 33369731 |
| chr_2 | g8824 | g8824.t3 | exon | g8824.t3.exon2 | 33369791 | 33370464 |
| chr_2 | g8824 | g8824.t3 | cds | g8824.t3.CDS2 | 33369791 | 33370417 |
| chr_2 | g8824 | g8824.t3 | TSS | g8824.t3 | NA | NA |
Sequences
>g8824.t3 Gene=g8824 Length=1801
TAAAATATGAACAACAACATGCAACACAAAAGAAACGCTTATTGGCGATGACACAGAATG
ATCCAAATATCACAAACAATTCCTCGTCTTCGACAAATCAATTGAAGCAAGAACCTGCAG
ATTTCAATACATCATCAAATTCGTTAAATTACGAATATCCACCATTTGATCATCAAAAAC
GGTCATCATGGGTTGGTCCATCATCGACAGCCGTATCAACAATAGTTCAACCATCGAACA
TTCATCAGAATCATCATGTATCGCATAATAATAAACGTGATACATCTGGCTGCGGATCAA
GTTCGAGCTCACAACAACAACAACAGCAGCAGCAGCCAATAGTGGCACATGGCAAGAGTG
ATATGCCATTATCGTCAAGCTCTAATACTACCTCGTTAAACAGTACACCAATATTTCACC
ACCATCATCATCATAATAATTCGAGTCATCATCATCGCACGCAGCCTCAAAATATTACGC
CTTTGGGTAATTCACCCATTAGCGGAGGATCGCAAGCTACGGCTTTGTTGCAGCAGACAC
AGCAACCTGATATTTATGCCCAAGCAAATGAAATTTACAGAAACAGGTCAACTCTCTATG
TGCAACAACCGACATATGCTTACGACACTCGCATAATTCAGCCACCGCCAGCACATAATC
CATCAAATCGACAGGTGATGCCAACACATCAATTGCCTGCACATATTAATTTTCCATCAT
ATGGTCAATTTGGTGCATCACCTTTAAGTCCTCAAGTGGCAGCAACATTGAGACCCAACT
TTTGGCTTGCTGAGTAATTTTCCACTATGCATTTATATATAAAAATTGTTCTCGTTCATA
AAAATATGGAATGATTTTTTTTTTGTTTTTTTATTATTAAATTATCTTGTAATAATTATC
ATAACAATATGCAACACATAAATAATAATATAACTATTATATGTTCATATCGACCAATAA
CATTTGAAATTGATTTTTCTACTATCACATTTTTTTATTATTATTATTTAAAACATCTTT
CCTTTTTCACATACACGATTGAAAAGGATTGATAATCAAAGAAATTCTAAAGAAAAATAA
TCTTATTATAGCATTATATAAAAATACAATATATGATTATTATTATCAAAACTTATTATT
ATTATTACGTGTAATATTGTATCTACACACACAACAGGATTCACTGCAAGAGAAAAAGGA
AAATAATTAGTAATTTTTAAAAATGCAAAAATATATATATTTAACATTGTTACTATAATA
ATGCAAATTGTGTGTGTGAGAGTGTAATGAGTTTTTTTTACGGTTTTTCATATATTTTGA
TCATTAAAATATCATTTTTTTGGAAGTACAACAAATGCAGTAATTTTCATAAAACTAGAA
ATTAATAAAAAATGGTGTTGAACATTTTAAAACTATTCTAATAAATATATAGAGAGCATG
GCAAAATGTTGGAAATATTTTTTTTTCACAATTCATATTTGAATCAGAAAGCTTTTTTTC
ACTAAAACTTCTTAACAATTTAATGAAAATGTAAAAATTCAATAGCATATTAGCATTTCT
GTTTCAAACTTTACTGATTACAAAAAAGATTTTAGAGTAGAAGATTTTTAATAGTGTTCC
AAAGTTTTCTGATCAAAATGACCAACAAAAAATTTTGCCATGCATTTTCATAAAATTTAT
ATTTCGCATGATTGAAACTCGAAAAAATACCAGCATAAGAATAATTAATTAAAAGCAGTA
TGTAGATGAGAATGCACTTATATTGAGGGAAGACATGCATACATAAATACATTAAACAAA
A
>g8824.t3 Gene=g8824 Length=249
MTQNDPNITNNSSSSTNQLKQEPADFNTSSNSLNYEYPPFDHQKRSSWVGPSSTAVSTIV
QPSNIHQNHHVSHNNKRDTSGCGSSSSSQQQQQQQQPIVAHGKSDMPLSSSSNTTSLNST
PIFHHHHHHNNSSHHHRTQPQNITPLGNSPISGGSQATALLQQTQQPDIYAQANEIYRNR
STLYVQQPTYAYDTRIIQPPPAHNPSNRQVMPTHQLPAHINFPSYGQFGASPLSPQVAAT
LRPNFWLAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g8824.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - |
| 4 | g8824.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - |
| 2 | g8824.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 114 | - |
| 3 | g8824.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 114 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
