General information for g8841.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Very long-chain-fatty-acid–CoA ligase bubblegum.
Parent gene
- The parent gene g8841 is located on chr_2: 33486080..33487783 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8841 | g8841.t1 | isoform | g8841.t1 | 33486080 | 33487783 |
| chr_2 | g8841 | g8841.t1 | exon | g8841.t1.exon1 | 33486080 | 33487386 |
| chr_2 | g8841 | g8841.t1 | cds | g8841.t1.CDS1 | 33486080 | 33487386 |
| chr_2 | g8841 | g8841.t1 | exon | g8841.t1.exon2 | 33487447 | 33487783 |
| chr_2 | g8841 | g8841.t1 | cds | g8841.t1.CDS2 | 33487447 | 33487783 |
| chr_2 | g8841 | g8841.t1 | TSS | g8841.t1 | NA | NA |
| chr_2 | g8841 | g8841.t1 | TTS | g8841.t1 | NA | NA |
Sequences
>g8841.t1 Gene=g8841 Length=1644
ATGATCTTTAATTTCTTTAGAGGTCAAATTGTTTCGATTTACATAACAAATTCATCCGAA
GCATGTCATTATGTGCTTAATAATTCTAAAGCAAATATTGTAGTAGTCGATACGGATGAG
CAACTAGAGAAAATTCTAAAAATACGTGATAAATTGCCTCATTTAAAAGCAATTGTTAAA
ACTTTGCTAGGTCAGCAAAATGTTGAAGGTATTTGGAAATGGAGCGATTTAGAAGCAATG
AAAATCGATAAAGATATTGAAATTGAATACCAAAAAAGACTTGTTCAAATCAAACCATCA
GATTGTTGTTCTGTTTGTTATACATCAGGCACAACTGGCAATCCAAAAGGCGCTCTTTTA
TCGCATGATAATTTCGTGTGGGAAATTGAATCACTCACGACTGCCCTTCAATGTTTTCAA
AGAGGTAAAGAAACAGGCATATCTTATTTGCCTCTAGCTCACATGAGTGGTCAATTGAGT
GAAATAATGATGGCAATCTGGTCAGGAGCAACAATTTATTTTGCCGATAAAGACGCTTTC
AAAGGCACATTAATTGACACATTGCGTGCCGCTCGACCAACTTATTTTGTGTCTGTGCCT
CGAATATACGAAAAGTTTCATGAGAAAATCGTGCAAGCGATTAACGAAACAAAAGGATTA
AAAAGGATTTTGTTATCATGGGCGCAAAGTGTCACACTTGACTATCATATGAAAAAACTC
GAAAGTGGACAACAACAGTTTTTTTCACTACAATATGAGATAGCAAAAAAATTAGTCTTA
ACTAAATTAAAGTCAACACTTGGATTAGATAGATGTCGAGCATTTTATATTGGAGCTGCG
CCTGTGGGCATTGAAATAATAAAATTCTTTCTTAGTTTAGATATTCAGTTACAAGAAGTT
TATGGAATGACAGAAGCCACTGGGATTTCTTTCTTACATGCAAGATGGCACAGAAAATTA
ACTACCTTGGGAAAAGTTGTACCAGGATTAGAAGCAAAAATTGTAAATCCAGATGAAGAT
GGTCTTGGTGAGATTTATACTAGAGGAAGAAATACTTTTATGGGTTATATGAATGAACCT
GAAAAGACAAAAGAAACAATTGATGAAGACGGATGGATTAAAACAGGAGATATTGGTTAC
ATTGATAATGAAGGATTCTTGCATATGAAAGGAAGAATTAAAGAGTTAATAATAACAGCA
GGTGGTGAAAATATTCCATATTTACATATTGAAAATCTTGTCAAGAATGAATGCCATGCA
ATTTCCAATACTTTTCTTATTGGTGATAAAAGAAAATTTCTGACAATGCTGATTACATTG
AAGACTAAAATGAACAGTGATGGAGCACCATGTGATGAACTTGCACCTGAAAGTTTATCA
TTAATGAAAGAACTTGGATTGGAATACAAATTGTTGAGTGAAATTCTCAATTCTGGACCT
GATCCGAAAATTATTGAAGCTTTACAAGCAGCAATCGACCGTGCAAATAAAAAAGCAATT
TCAAATGCTCAAAAAGTTCAAAAGTTTGCAATTCTTCCAAATGATTTTAGTTTACCAACT
GGTGAGCTTAATGCAACAATGAAATTGAAGAGAAATTTGGTTCAAGAAAAGTACAAAGAA
ATAATTGAAAGTTTTTATATTTAA
>g8841.t1 Gene=g8841 Length=547
MIFNFFRGQIVSIYITNSSEACHYVLNNSKANIVVVDTDEQLEKILKIRDKLPHLKAIVK
TLLGQQNVEGIWKWSDLEAMKIDKDIEIEYQKRLVQIKPSDCCSVCYTSGTTGNPKGALL
SHDNFVWEIESLTTALQCFQRGKETGISYLPLAHMSGQLSEIMMAIWSGATIYFADKDAF
KGTLIDTLRAARPTYFVSVPRIYEKFHEKIVQAINETKGLKRILLSWAQSVTLDYHMKKL
ESGQQQFFSLQYEIAKKLVLTKLKSTLGLDRCRAFYIGAAPVGIEIIKFFLSLDIQLQEV
YGMTEATGISFLHARWHRKLTTLGKVVPGLEAKIVNPDEDGLGEIYTRGRNTFMGYMNEP
EKTKETIDEDGWIKTGDIGYIDNEGFLHMKGRIKELIITAGGENIPYLHIENLVKNECHA
ISNTFLIGDKRKFLTMLITLKTKMNSDGAPCDELAPESLSLMKELGLEYKLLSEILNSGP
DPKIIEALQAAIDRANKKAISNAQKVQKFAILPNDFSLPTGELNATMKLKRNLVQEKYKE
IIESFYI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8841.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 6 | 234 | 8.2E-35 |
| 7 | g8841.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 237 | 395 | 1.6E-38 |
| 2 | g8841.t1 | PANTHER | PTHR43272 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 10 | 546 | 6.1E-190 |
| 3 | g8841.t1 | PANTHER | PTHR43272:SF32 | LONG-CHAIN-FATTY-ACID–COA LIGASE ACSBG2 | 10 | 546 | 6.1E-190 |
| 1 | g8841.t1 | Pfam | PF00501 | AMP-binding enzyme | 10 | 399 | 7.8E-75 |
| 5 | g8841.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 105 | 116 | - |
| 4 | g8841.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 10 | 546 | 6.8E-85 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01897 (long-chain acyl-CoA synthetase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed