General information for g8877.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Rapamycin-insensitive companion of mTOR.
Parent gene
- The parent gene g8877 is located on chr_2: 33619093..33624884 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8877 | g8877.t3 | TSS | g8877.t3 | 33618712 | 33618712 |
| chr_2 | g8877 | g8877.t3 | isoform | g8877.t3 | 33619093 | 33620233 |
| chr_2 | g8877 | g8877.t3 | exon | g8877.t3.exon1 | 33619093 | 33620233 |
| chr_2 | g8877 | g8877.t3 | cds | g8877.t3.CDS1 | 33619289 | 33620233 |
| chr_2 | g8877 | g8877.t3 | TTS | g8877.t3 | NA | NA |
Sequences
>g8877.t3 Gene=g8877 Length=1141
CCTAAGTTCCAACTATGTTTCGAATATCACACAAATTCGTGCTGGCGCTTTACGTTTATC
ACGCTATATATTGAATACAGTACATGACCTACAAACTTTCAATAAACTACAACTTCCCAT
ACTTTTATGCAGAAGCTTGGATTTAGTTGTTAAGAATGAAGAAGAAAGAATACAGGCATT
GAAATTAATAAGAAAGATGATAGCAATTCAGCCTGATTTATTAAATCCAGCAATTGTAAG
ATGTCTCACATCATTAGGTGACACGCTAATGATTGATGGCACAAAGCCGGATCGAATAGT
ACGTGCGTGTTTGGCCACTCTCTCGGAATTGGGTGTTTTAAATCCAGTTTTATTAATTTT
AACAAACGGTGTGGCAGTAATAACTCGCAATGTACTCGAATGTGACAGTCCTCGCATTGC
AGAAAGTTTAGTTGGTGTGTTATTGCACTTGTTAGAATATCCGCACACACGAAATATTGC
GGGCATTCGACTGGATTGTCTCGCTGCACCTTATTGCGATTTCACTTACCGCTTAGGAAT
TATGGACAAAAATAAGGACGCACGAGAATTACGATTCAAATGTTCACGTTTAGCACTTCT
TTCAGTGCTTCGGAGTTTTAATGGAGTTTTAGAATTTTGCAATCCTAATAAGGCATCGGG
TTTGAAAGCCATTATTGATGTATTATATTTGAATCAATTAGAAGTTAGAAAAGCCATTTT
GGATTTATTGTATGAGCTCATAAACCTTCCGCAAGCAGTTTGGACGGACGAATATTCAGT
GGCGTTAGCCGCAGTCGATCCCTCAGACTATCAAGATTCGTGGCGTTTGAGCGAGGGATT
TGTGGCGCTAGAAGGACGTTCAGTTTTGCCAAGTTTGATCAACAAAGTGCCCAATATATG
TGAAATACATCAGGCCTTTATTCTCTATTGTTTTCTTGAGAATGGCCTGCTCAATGCCTT
AGTCGAAGTAATAATAAGTAGCGACACTTTTATATCCGTTCGAGCGACAATTTTATTGGC
TAAACTACTACAAATGATTCACACAATGTTACCGGCCGATGTCTGTAGTACATCACCACC
ACTTCCGATGCTGATTGCGAAAGCCACTGAAGGAAATTATCAAGCAAGAGCTGCCATTTC
A
>g8877.t3 Gene=g8877 Length=315
MIAIQPDLLNPAIVRCLTSLGDTLMIDGTKPDRIVRACLATLSELGVLNPVLLILTNGVA
VITRNVLECDSPRIAESLVGVLLHLLEYPHTRNIAGIRLDCLAAPYCDFTYRLGIMDKNK
DARELRFKCSRLALLSVLRSFNGVLEFCNPNKASGLKAIIDVLYLNQLEVRKAILDLLYE
LINLPQAVWTDEYSVALAAVDPSDYQDSWRLSEGFVALEGRSVLPSLINKVPNICEIHQA
FILYCFLENGLLNALVEVIISSDTFISVRATILLAKLLQMIHTMLPADVCSTSPPLPMLI
AKATEGNYQARAAIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8877.t3 | PANTHER | PTHR13298 | CYTOSOLIC REGULATOR PIANISSIMO | 1 | 309 | 0.0e+00 |
| 1 | g8877.t3 | Pfam | PF14664 | Rapamycin-insensitive companion of mTOR, N-term | 7 | 286 | 0.0e+00 |
| 4 | g8877.t3 | SMART | SM01308 | RICTOR_N_3 | 1 | 286 | 0.0e+00 |
| 3 | g8877.t3 | SUPERFAMILY | SSF48371 | ARM repeat | 31 | 279 | 3.2e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031929 | TOR signaling | BP |
| GO:0031932 | TORC2 complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed