General information for g8895.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8895 is located on chr_2: 33732338..33734231 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8895 | g8895.t1 | TSS | g8895.t1 | 33728498 | 33728498 |
| chr_2 | g8895 | g8895.t1 | isoform | g8895.t1 | 33728525 | 33734231 |
| chr_2 | g8895 | g8895.t1 | exon | g8895.t1.exon1 | 33728525 | 33730076 |
| chr_2 | g8895 | g8895.t1 | cds | g8895.t1.CDS1 | 33728525 | 33730076 |
| chr_2 | g8895 | g8895.t1 | TTS | g8895.t1 | 33728935 | 33728935 |
| chr_2 | g8895 | g8895.t1 | exon | g8895.t1.exon2 | 33730212 | 33731843 |
| chr_2 | g8895 | g8895.t1 | cds | g8895.t1.CDS2 | 33730212 | 33731843 |
| chr_2 | g8895 | g8895.t1 | exon | g8895.t1.exon3 | 33732338 | 33732721 |
| chr_2 | g8895 | g8895.t1 | cds | g8895.t1.CDS3 | 33732338 | 33732721 |
| chr_2 | g8895 | g8895.t1 | exon | g8895.t1.exon4 | 33732781 | 33734231 |
| chr_2 | g8895 | g8895.t1 | cds | g8895.t1.CDS4 | 33732781 | 33734231 |
Sequences
>g8895.t1 Gene=g8895 Length=5019
ATGTTGAAAATTAAAGCGCGGCTAAAATTTCTTCTTCTTAAAATTCTATTTTTGGCATGT
GCTGTTAATGGAAGGAAATATACACAATGTGAGCTTTCAACTGAACTTCAAAATATTCAC
AATGTGGCAGTCGATCAAACGAAGAAACTCGTGTGCATTGCACAAAAATTTTCACGTTTA
AATACAAACATTGTTGCTGGTGAACTTTATGGAATTTTTCAAATTAATAGTAAATGGTGT
GAAATAGGAAAAGAAGGTGGTGAATGCAATGTCAAATGTGAAAATCTTCTTAATGATGAC
ATAGCAGATGATGTGAAATGTGCACAATCAATTATCACAAAATTTGGCATGAATGGTTGG
CGTATGGATAAAATACAAGGTTGCATTAAAAATTTCGATGACAATTGTCCAAATAAAGAA
GAAAAAATGAATCAGCAGCATGCAAATTATTGTGAATATGCCACAAAATTAATCGCATCG
TATGACATTTCCAAGTTAGATGCCATGACTTGGTCATGTATTAAGCAGCATCACAGCGAC
ACACACGCATTGAAAACTGGAAATGTAAACTTGAAATTAGCAGAAAACGACGATCAAATT
GCCGCCACATGTGTTGCTATTCATGACGTTGAATGTTCAATAAAAATTAATAAACAACGC
AACAACTACGATTCTATGAATGGATTTTCTATTTGGCCAGAATATAAAGAATTTTGCAAA
AATATTTCCGGTGATGAAATTACGAAATGTTTTGGAATTCACCATGAAGTCATCATTAAA
AGTGAAAGTGAAGGAACAAAGTTGACAGCTTTTGAAAGTCCAACGAAAGAAATAAATTTA
AAACAGTTTACAACATCAACTGAAATTTCTGTGATTATTGAGGATGATCAAAGTGTTACA
ATTAAAAATGAACCGGAAACAAGCACAGAATTTCTTTCTAAAACTATTGAAAAACCAGCA
GACAATATGATGATTGAAGGATATTCAAAAGTTCGATTAATGTTCTCTGATGAAGATAAA
ATTGAAAATTCTACTAGAAAAGATGATTTACCAGTCAATAATTCTCTTCGATGTGACATA
ACGAGAAATTTCATTGAGTCAGGTCAAATCCCATTAGCATTAATCGACACATTTGTATGC
ATAGCTGAACATGAATCAAAACTTAATGTCACTTTGGTCAAAGAAATAGGAGATGTGCAG
AAATATGGTTTATTTCAAATTGATGATTTGAATTATTGTAATACAAATGATAAAATTAAT
TATTGTGACGTCTTGTGTTTACATCTTCTTGATAATCAATACGATAATGATTTGGAATGT
GTAAAAAAAATTTATGAAAGAGAAGGTTTTGATTATTGGCCATCATATTCACGCCATTGC
AGAAATGTAAGCTCAAATTTAGTTGTAAGCTGTCAAGAGATACGCACAACTACTCATCGA
CCTTATACTGTGCCTAATTACGAACTATTGAAGCAAAAGTTTAATTTATCCGAGAGATTA
GAAACAACAACAAAAACAATAGCTGAGAAAAATGATGTTATTAAAATTGAAGAAGAAGAC
CAAACAACGATAGCACCAATTTTAATGGATATTTTAAAACAGTTTGATATTTGTGAATTT
TCTCAATATCTTTATTCAAACGAGAACATTTCATTGAAATATTTAACTGATTATGTTTGC
ATTGCTGATCAAGCATCAAAATTAAGAATTTTAAAAAGTGATGAAAATGGAATTTTTGGG
TTAAAAAATGATGCATGTGAAAAATGTTCTATTGATTGCAAAGAATTTACAAACGAAAAT
TTACATGACGATGTCCAATGTGTGACTAAAATTTATAAAGAAAATTCTTTGAGTTACTGG
AATTTAACAGAAGAAATTTGCAAGCCATACAGCAATAAAATTTTACAATGCATTAATCAA
GACAAGTTTATAACAGTTGATGATGAAGATGAATTCAATTTTAGTAAAGTGAGTGCTCGT
AATAAAAAAATGGAAGAAAGCAAAGAAGCTGAAGAAACAATAGTGAAAAATGAATTACAA
GAAAATATTGAGAAAAATCAATTAGAAGAAACAACAGAGAAACAAATCATTGAGAATTCT
TCAGCTGAAAAAGTTCATAATGACGTTAATATTGAAAATGATAAAGTAAGATTGCTTTTA
CATAACACATTGGATGATTTGCTTAAAGAATTAGCACAAAATTTGACAAATGAAGAAATG
TCGTCAATTAAAGTTCCATTAGAGAAATTAAGTCAAGCTGAAACAGAAAAAAATTATACT
GAAGAAGATATTTCAAAAATGGAGCAAAAAATTCGCAATGCTTTGAATGGAATATTGAAA
ATACTTGAAGAAAATGACACAAACAAAGACGAATCAACAACCTTAAAAGAATCACTTAAT
AATGACTCAAAGTTATTGACAAATAAAGAAGCACATGTGAATGATAGTGAAAGTGAATTG
TCGCGTAAAGTTATTGTAAAGCAAGGTATTGATGGAAAAATAATCACAGAAAAAGATTCA
GAAGAGAGTGTAGAAGATTTAGATGAAGATCATTTGACAAATTCAATGATTGATGATGAA
TCTTTAATGACAACAGAAATTCCAAAAATTTCAACAATTTCGCTGATAAATTTGAAAGTT
TTAACTGACAAAAAGCAAAAATTGGTAACGAATGATGATGAATCAATTATAACTACAACT
GAAAATGGTGAAATTTTAACAACTCTTAATCAAGATCAATTGACACCATCAACTTTTATT
CATAATTTAAAAACTTTTGAAAATGAACGAAAATTGAGCACGACGACAAATGATCCACTT
TTTTACACAAGCGTTCAAGAAATTATTGAAGATTATGAGAAATTTGATGATAGGAACATT
GTTAAACGAAAAACAACACAATATCCAGAAAGTGATGAAGATTTCACAACTACAGAAGAT
AGTGCAGAAATGGAAATTGCAACTTCACAAAGCTTTGTTACTACTACAGCAAAACCATCA
ACTACAACAAAATATGATCCTGAAAAAATCACTTTTCCTCCATTAAGCTATGGTGTAGTC
GATAAATGTGCATTAATAAGAAACATAAGAGAATCAGATAAAATTCCATCAAATTTAATT
TCTACATTTGTTTGTATTGCTGAACATGAATCAGGATTAAATGTTTCATTAATTCGAAGT
GATGGTGGTAAAAATAGAAAAATGAGATATGGCATTTTCCAAATTGATGAAATGGAATAT
TGTAATACAAATGAAAAAATCAATAAATGTGATGTTCTTTGTGCTCATTTAAATGATGAT
CAATTTGATAATGATCTTGAATGTGTTATGCAAATTTATAATACAGAGGGATTAAAATAT
TGGCCATCTTATTCAAGACATTGCTCACATATTGATCCAAAAGCATTTGATGATGATTGT
AGAGTTGTTTTCACAACATCACATCGACCTTTTACACCATTCGATAGAGAAGCAGCACTT
CGAGATTTGTTTACAACAACCGCTGCAACGACTACAACAACAACAATTCAAACGACAACA
GTAGCTCTTCCTAAATATAATTATACAGACGATGAATCAAATTTTATTATTAGGCGTTAT
GATTTGTGTGAATTAGCAAATGAAGTGTATAAAAACAATGTATCACTTGAAGAAACTTCT
CAACTTGTTTGTGTAGCTGATTTAGTATCGAAATTGAAAATAAAAAGACCTCTATTAGAA
GATGATAAATTTGGAATTTTTCAAATAGACAAACAATATTGTGAAGAAGGTGGAATTTGT
GGAATAAAGTGTTCTGATTTACTTGATGATGATCTTTCTGATGATATTCATTGCTTAAAC
ATAATTGGTGATAATAAAACTATGCTTTGGAATTTAAGTAATGATGCATGCACTTCATAT
CACGCAAGCTTTTTAAATTGCATTGATAATGATTTATTCCAAACAACAAAAGATCCATCA
AGTATGAATGCAATAACACCATGGATTGGATTTTTATCGACGACAACTGAAGCAATGACA
CATCAAGAGAGTGAAGAGGAAACAACGACTTCATATTATGATAATGGAATTTTAACAACA
ATTGAAGTTTTAAAAAGCACTCAATTTCCATCCGTTGAACAAGAACAAGCTATTTCCCCT
CTTCATGAATTTTTATTGCCACCACATTTTGATGAAAGTTCTACCACAACTGAATTTGAT
CATTCTACAAGCACTGAAAAGCCTGTTACACTTTCAATTTTACTTGAGCCACCACATTTT
AATGAAAAGAATGAAGAAACAACTACAATAAATGATATTGATGAAACTACAATTGCAGTA
AATTCAAATATAACAGAAGAAGATTTAAAAAGGGTTGTCGACATAATCCTTTCTCCTGAT
AATATTTTGCCAAAAGTAAATTTATCAGATGAAAATAATGATGAAACTACAATTGAATCA
ATCATTGAAAATGAAGCAAAATCATCAGAAATTACAACAGAAAAGTCTCAAGATGAAACA
TTGCCAACACTAGAAATTTCAACTACTCAAAAATCAAGTAATAAAAATATAGAAACTGTG
CATCAATTTTTATTGCCACCAAAAGATGATAAAAATGAAGGAGGTGAAGAAATTGAAATT
GAAACAGAAAAACCTGAAGAATTTCGAATTGTTGTAACCAGTGGTGAAATTACAACATTA
TCAATTGAAAATCTTATAACACCAACAACAGATGTATCCGAAATCAATAATTCAATACAT
ACTGAAGCTGAACAAACAACAAAAATAAATGAATTAGAAACCAGTCATTCAACACACAAT
GAATTTGATACAACAACAAAAGTACCATCATCTTCTTATTCCTCACCTATTTTTAAAAGA
CGATCAACGACCAAAAGTATCCAAATGAATGAAGTGACACCTAAAATACGAAATTTAGTG
ACGAGTCAGTTAAATAATAATCGTAGGAGGATTTCAACAACTACCACAGAAAAATACGAA
AATATATTCGATGTCGCTGAGCATAATATGTGCGAGTAA
>g8895.t1 Gene=g8895 Length=1672
MLKIKARLKFLLLKILFLACAVNGRKYTQCELSTELQNIHNVAVDQTKKLVCIAQKFSRL
NTNIVAGELYGIFQINSKWCEIGKEGGECNVKCENLLNDDIADDVKCAQSIITKFGMNGW
RMDKIQGCIKNFDDNCPNKEEKMNQQHANYCEYATKLIASYDISKLDAMTWSCIKQHHSD
THALKTGNVNLKLAENDDQIAATCVAIHDVECSIKINKQRNNYDSMNGFSIWPEYKEFCK
NISGDEITKCFGIHHEVIIKSESEGTKLTAFESPTKEINLKQFTTSTEISVIIEDDQSVT
IKNEPETSTEFLSKTIEKPADNMMIEGYSKVRLMFSDEDKIENSTRKDDLPVNNSLRCDI
TRNFIESGQIPLALIDTFVCIAEHESKLNVTLVKEIGDVQKYGLFQIDDLNYCNTNDKIN
YCDVLCLHLLDNQYDNDLECVKKIYEREGFDYWPSYSRHCRNVSSNLVVSCQEIRTTTHR
PYTVPNYELLKQKFNLSERLETTTKTIAEKNDVIKIEEEDQTTIAPILMDILKQFDICEF
SQYLYSNENISLKYLTDYVCIADQASKLRILKSDENGIFGLKNDACEKCSIDCKEFTNEN
LHDDVQCVTKIYKENSLSYWNLTEEICKPYSNKILQCINQDKFITVDDEDEFNFSKVSAR
NKKMEESKEAEETIVKNELQENIEKNQLEETTEKQIIENSSAEKVHNDVNIENDKVRLLL
HNTLDDLLKELAQNLTNEEMSSIKVPLEKLSQAETEKNYTEEDISKMEQKIRNALNGILK
ILEENDTNKDESTTLKESLNNDSKLLTNKEAHVNDSESELSRKVIVKQGIDGKIITEKDS
EESVEDLDEDHLTNSMIDDESLMTTEIPKISTISLINLKVLTDKKQKLVTNDDESIITTT
ENGEILTTLNQDQLTPSTFIHNLKTFENERKLSTTTNDPLFYTSVQEIIEDYEKFDDRNI
VKRKTTQYPESDEDFTTTEDSAEMEIATSQSFVTTTAKPSTTTKYDPEKITFPPLSYGVV
DKCALIRNIRESDKIPSNLISTFVCIAEHESGLNVSLIRSDGGKNRKMRYGIFQIDEMEY
CNTNEKINKCDVLCAHLNDDQFDNDLECVMQIYNTEGLKYWPSYSRHCSHIDPKAFDDDC
RVVFTTSHRPFTPFDREAALRDLFTTTAATTTTTTIQTTTVALPKYNYTDDESNFIIRRY
DLCELANEVYKNNVSLEETSQLVCVADLVSKLKIKRPLLEDDKFGIFQIDKQYCEEGGIC
GIKCSDLLDDDLSDDIHCLNIIGDNKTMLWNLSNDACTSYHASFLNCIDNDLFQTTKDPS
SMNAITPWIGFLSTTTEAMTHQESEEETTTSYYDNGILTTIEVLKSTQFPSVEQEQAISP
LHEFLLPPHFDESSTTTEFDHSTSTEKPVTLSILLEPPHFNEKNEETTTINDIDETTIAV
NSNITEEDLKRVVDIILSPDNILPKVNLSDENNDETTIESIIENEAKSSEITTEKSQDET
LPTLEISTTQKSSNKNIETVHQFLLPPKDDKNEGGEEIEIETEKPEEFRIVVTSGEITTL
SIENLITPTTDVSEINNSIHTEAEQTTKINELETSHSTHNEFDTTTKVPSSSYSSPIFKR
RSTTKSIQMNEVTPKIRNLVTSQLNNNRRRISTTTTEKYENIFDVAEHNMCE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 28 | g8895.t1 | Coils | Coil | Coil | 661 | 681 | - |
| 29 | g8895.t1 | Coils | Coil | Coil | 750 | 770 | - |
| 24 | g8895.t1 | Gene3D | G3DSA:1.10.530.10 | - | 25 | 137 | 1.9E-24 |
| 27 | g8895.t1 | Gene3D | G3DSA:1.10.530.10 | - | 354 | 472 | 3.1E-25 |
| 26 | g8895.t1 | Gene3D | G3DSA:1.10.530.10 | - | 533 | 637 | 2.9E-12 |
| 23 | g8895.t1 | Gene3D | G3DSA:1.10.530.10 | - | 1019 | 1136 | 1.1E-26 |
| 25 | g8895.t1 | Gene3D | G3DSA:1.10.530.10 | - | 1198 | 1307 | 2.3E-16 |
| 10 | g8895.t1 | PANTHER | PTHR11407 | LYSOZYME C | 5 | 130 | 4.4E-104 |
| 15 | g8895.t1 | PANTHER | PTHR11407:SF63 | LYSOZYME | 5 | 130 | 4.4E-104 |
| 8 | g8895.t1 | PANTHER | PTHR11407 | LYSOZYME C | 355 | 495 | 4.4E-104 |
| 13 | g8895.t1 | PANTHER | PTHR11407:SF63 | LYSOZYME | 355 | 495 | 4.4E-104 |
| 7 | g8895.t1 | PANTHER | PTHR11407 | LYSOZYME C | 533 | 667 | 4.4E-104 |
| 12 | g8895.t1 | PANTHER | PTHR11407:SF63 | LYSOZYME | 533 | 667 | 4.4E-104 |
| 6 | g8895.t1 | PANTHER | PTHR11407 | LYSOZYME C | 1019 | 1149 | 4.4E-104 |
| 11 | g8895.t1 | PANTHER | PTHR11407:SF63 | LYSOZYME | 1019 | 1149 | 4.4E-104 |
| 9 | g8895.t1 | PANTHER | PTHR11407 | LYSOZYME C | 1199 | 1351 | 4.4E-104 |
| 14 | g8895.t1 | PANTHER | PTHR11407:SF63 | LYSOZYME | 1199 | 1351 | 4.4E-104 |
| 5 | g8895.t1 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 26 | 124 | 1.2E-16 |
| 4 | g8895.t1 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 373 | 464 | 1.8E-19 |
| 2 | g8895.t1 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 533 | 633 | 6.0E-5 |
| 1 | g8895.t1 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 1020 | 1130 | 3.3E-21 |
| 3 | g8895.t1 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 1199 | 1304 | 3.9E-9 |
| 31 | g8895.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 32 | g8895.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 9 | - |
| 33 | g8895.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 10 | 20 | - |
| 34 | g8895.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 21 | 24 | - |
| 30 | g8895.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 1672 | - |
| 38 | g8895.t1 | ProSitePatterns | PS00128 | Glycosyl hydrolases family 22 (GH22) domain signature. | 89 | 107 | - |
| 36 | g8895.t1 | ProSitePatterns | PS00128 | Glycosyl hydrolases family 22 (GH22) domain signature. | 589 | 607 | - |
| 37 | g8895.t1 | ProSitePatterns | PS00128 | Glycosyl hydrolases family 22 (GH22) domain signature. | 1260 | 1278 | - |
| 43 | g8895.t1 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 25 | 154 | 17.802 |
| 45 | g8895.t1 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 353 | 474 | 20.759 |
| 44 | g8895.t1 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 1018 | 1143 | 22.607 |
| 42 | g8895.t1 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 1198 | 1310 | 11.474 |
| 40 | g8895.t1 | SMART | SM00263 | lysozyme-fin | 25 | 129 | 1.0E-11 |
| 39 | g8895.t1 | SMART | SM00263 | lysozyme-fin | 353 | 472 | 4.3E-9 |
| 41 | g8895.t1 | SMART | SM00263 | lysozyme-fin | 1018 | 1141 | 5.8E-13 |
| 19 | g8895.t1 | SUPERFAMILY | SSF53955 | Lysozyme-like | 24 | 121 | 2.5E-21 |
| 20 | g8895.t1 | SUPERFAMILY | SSF53955 | Lysozyme-like | 357 | 471 | 4.07E-25 |
| 18 | g8895.t1 | SUPERFAMILY | SSF53955 | Lysozyme-like | 533 | 631 | 1.66E-13 |
| 17 | g8895.t1 | SUPERFAMILY | SSF53955 | Lysozyme-like | 1019 | 1133 | 3.44E-25 |
| 16 | g8895.t1 | SUPERFAMILY | SSF53955 | Lysozyme-like | 1199 | 1303 | 9.07E-15 |
| 22 | g8895.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 35 | g8895.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 21 | g8895.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 21 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00704 (alpha-lactalbumin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed