General information for g8895.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8895 is located on chr_2: 33732338..33734231 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8895 | g8895.t2 | isoform | g8895.t2 | 33732338 | 33734231 |
| chr_2 | g8895 | g8895.t2 | exon | g8895.t2.exon1 | 33732338 | 33732721 |
| chr_2 | g8895 | g8895.t2 | cds | g8895.t2.CDS1 | 33732355 | 33732721 |
| chr_2 | g8895 | g8895.t2 | exon | g8895.t2.exon2 | 33732781 | 33734231 |
| chr_2 | g8895 | g8895.t2 | cds | g8895.t2.CDS2 | 33732781 | 33734231 |
| chr_2 | g8895 | g8895.t2 | TTS | g8895.t2 | 33734839 | 33734839 |
| chr_2 | g8895 | g8895.t2 | TSS | g8895.t2 | NA | NA |
Sequences
>g8895.t2 Gene=g8895 Length=1835
GTGGTAAAAATAGAAAAATGAGATATGGCATTTTCCAAATTGATGAAATGGAATATTGTA
ATACAAATGAAAAAATCAATAAATGTGATGTTCTTTGTGCTCATTTAAATGATGATCAAT
TTGATAATGATCTTGAATGTGTTATGCAAATTTATAATACAGAGGGATTAAAATATTGGC
CATCTTATTCAAGACATTGCTCACATATTGATCCAAAAGCATTTGATGATGATTGTAGAG
TTGTTTTCACAACATCACATCGACCTTTTACACCATTCGATAGAGAAGCAGCACTTCGAG
ATTTGTTTACAACAACCGCTGCAACGACTACAACAACAACAATTCAAACGACAACAGTAG
CTCTTCCTAAATATAATTATACAGACGATGAATCAAATTTTATTATTAGGCGTTATGATT
TGTGTGAATTAGCAAATGAAGTGTATAAAAACAATGTATCACTTGAAGAAACTTCTCAAC
TTGTTTGTGTAGCTGATTTAGTATCGAAATTGAAAATAAAAAGACCTCTATTAGAAGATG
ATAAATTTGGAATTTTTCAAATAGACAAACAATATTGTGAAGAAGGTGGAATTTGTGGAA
TAAAGTGTTCTGATTTACTTGATGATGATCTTTCTGATGATATTCATTGCTTAAACATAA
TTGGTGATAATAAAACTATGCTTTGGAATTTAAGTAATGATGCATGCACTTCATATCACG
CAAGCTTTTTAAATTGCATTGATAATGATTTATTCCAAACAACAAAAGATCCATCAAGTA
TGAATGCAATAACACCATGGATTGGATTTTTATCGACGACAACTGAAGCAATGACACATC
AAGAGAGTGAAGAGGAAACAACGACTTCATATTATGATAATGGAATTTTAACAACAATTG
AAGTTTTAAAAAGCACTCAATTTCCATCCGTTGAACAAGAACAAGCTATTTCCCCTCTTC
ATGAATTTTTATTGCCACCACATTTTGATGAAAGTTCTACCACAACTGAATTTGATCATT
CTACAAGCACTGAAAAGCCTGTTACACTTTCAATTTTACTTGAGCCACCACATTTTAATG
AAAAGAATGAAGAAACAACTACAATAAATGATATTGATGAAACTACAATTGCAGTAAATT
CAAATATAACAGAAGAAGATTTAAAAAGGGTTGTCGACATAATCCTTTCTCCTGATAATA
TTTTGCCAAAAGTAAATTTATCAGATGAAAATAATGATGAAACTACAATTGAATCAATCA
TTGAAAATGAAGCAAAATCATCAGAAATTACAACAGAAAAGTCTCAAGATGAAACATTGC
CAACACTAGAAATTTCAACTACTCAAAAATCAAGTAATAAAAATATAGAAACTGTGCATC
AATTTTTATTGCCACCAAAAGATGATAAAAATGAAGGAGGTGAAGAAATTGAAATTGAAA
CAGAAAAACCTGAAGAATTTCGAATTGTTGTAACCAGTGGTGAAATTACAACATTATCAA
TTGAAAATCTTATAACACCAACAACAGATGTATCCGAAATCAATAATTCAATACATACTG
AAGCTGAACAAACAACAAAAATAAATGAATTAGAAACCAGTCATTCAACACACAATGAAT
TTGATACAACAACAAAAGTACCATCATCTTCTTATTCCTCACCTATTTTTAAAAGACGAT
CAACGACCAAAAGTATCCAAATGAATGAAGTGACACCTAAAATACGAAATTTAGTGACGA
GTCAGTTAAATAATAATCGTAGGAGGATTTCAACAACTACCACAGAAAAATACGAAAATA
TATTCGATGTCGCTGAGCATAATATGTGCGAGTAA
>g8895.t2 Gene=g8895 Length=605
MRYGIFQIDEMEYCNTNEKINKCDVLCAHLNDDQFDNDLECVMQIYNTEGLKYWPSYSRH
CSHIDPKAFDDDCRVVFTTSHRPFTPFDREAALRDLFTTTAATTTTTTIQTTTVALPKYN
YTDDESNFIIRRYDLCELANEVYKNNVSLEETSQLVCVADLVSKLKIKRPLLEDDKFGIF
QIDKQYCEEGGICGIKCSDLLDDDLSDDIHCLNIIGDNKTMLWNLSNDACTSYHASFLNC
IDNDLFQTTKDPSSMNAITPWIGFLSTTTEAMTHQESEEETTTSYYDNGILTTIEVLKST
QFPSVEQEQAISPLHEFLLPPHFDESSTTTEFDHSTSTEKPVTLSILLEPPHFNEKNEET
TTINDIDETTIAVNSNITEEDLKRVVDIILSPDNILPKVNLSDENNDETTIESIIENEAK
SSEITTEKSQDETLPTLEISTTQKSSNKNIETVHQFLLPPKDDKNEGGEEIEIETEKPEE
FRIVVTSGEITTLSIENLITPTTDVSEINNSIHTEAEQTTKINELETSHSTHNEFDTTTK
VPSSSYSSPIFKRRSTTKSIQMNEVTPKIRNLVTSQLNNNRRRISTTTTEKYENIFDVAE
HNMCE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g8895.t2 | Gene3D | G3DSA:1.10.530.10 | - | 1 | 69 | 9.0E-15 |
| 11 | g8895.t2 | Gene3D | G3DSA:1.10.530.10 | - | 131 | 240 | 5.8E-17 |
| 4 | g8895.t2 | PANTHER | PTHR11407 | LYSOZYME C | 3 | 82 | 2.0E-30 |
| 6 | g8895.t2 | PANTHER | PTHR11407:SF63 | LYSOZYME | 3 | 82 | 2.0E-30 |
| 3 | g8895.t2 | PANTHER | PTHR11407 | LYSOZYME C | 132 | 284 | 2.0E-30 |
| 5 | g8895.t2 | PANTHER | PTHR11407:SF63 | LYSOZYME | 132 | 284 | 2.0E-30 |
| 1 | g8895.t2 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 3 | 63 | 3.3E-13 |
| 2 | g8895.t2 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 132 | 237 | 9.7E-10 |
| 10 | g8895.t2 | ProSitePatterns | PS00128 | Glycosyl hydrolases family 22 (GH22) domain signature. | 193 | 211 | - |
| 13 | g8895.t2 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 1 | 76 | 16.504 |
| 14 | g8895.t2 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 131 | 243 | 11.474 |
| 9 | g8895.t2 | SMART | SM00263 | lysozyme-fin | 131 | 231 | 4.8E-4 |
| 8 | g8895.t2 | SUPERFAMILY | SSF53955 | Lysozyme-like | 2 | 66 | 1.06E-15 |
| 7 | g8895.t2 | SUPERFAMILY | SSF53955 | Lysozyme-like | 131 | 236 | 4.38E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed