General information for g8916.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8916 is located on chr_2: 33796442..33797434 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8916 | g8916.t6 | isoform | g8916.t6 | 33796442 | 33797434 |
| chr_2 | g8916 | g8916.t6 | exon | g8916.t6.exon1 | 33796442 | 33797434 |
| chr_2 | g8916 | g8916.t6 | cds | g8916.t6.CDS1 | 33796536 | 33797258 |
| chr_2 | g8916 | g8916.t6 | TTS | g8916.t6 | 33797431 | 33797431 |
| chr_2 | g8916 | g8916.t6 | TSS | g8916.t6 | NA | NA |
Sequences
>g8916.t6 Gene=g8916 Length=993
AAATAACAATAATGCAAATGCTAATCAAAATGTTAGGCCGAATGCTGCCGAACAACAAAA
TCCATTCCTTAATTTATTAAATCATGCTGCAGCGATGGGCAATCAACAACAACAATCGTC
ATCAGCAACTTCTTCAACCACATCACCAACGCCCAATATAACTCCGCCTTTTAACATTCA
AAATTTACCATCAACTGGTCCACTTCCTCCATTATTTTTTCCTTCATTGCCAACACCATT
TATGACACCATTCTCAATTCCTCCTCCACCAATGCCTCAAAATTTGGAACAATTGTCAGT
AGAAGAATTGCGTGCAATGGAAGGAAATGAAAGAAAACACATTGAAGAAAGACTTAAATT
ACTTAAAAATATAAACACAATGATAAATGCATCAGTTGTATTAATGAATCAATATAATAT
GGTAGTAGCAAATCTTCCATCAATTCCGCAACAACAGTCTAATCAACAACAACCATCAAC
ATCTGCATCATCTTCATTTAGTGATATTATAAAGAAAAATGAAGAAAAATCTTCATCGTC
AGTTTCTTCTACAAGCGAAGTTAAATTTGATACAAGTAAAGTAAAATTAGAAGATATAGG
AATGGAAGATGATCATTTAGATCAACCAACAACATCAACTAACAAATCAATGCCCAGTTC
AAGCAAAATAAAAACGGCAGAGACATCATCTTCATTAGATAGTCCATCGTCATCATCATC
AGCTTCATTTATTGCAAACGAAAGTGGTGAATGTGAATCAAACGAGGCAAACGAAATAAG
AAAACGTAGATTACAAAAATTTTTGCCTACTAATTGAGCTTTTCTATAAATATATATTGC
ATGTTTTTTGTTTTTCTATGAACATGAAACAACTATTTAAAAAATCTTTTGTCGATGTGT
AATCTTTATATTATATATATATATATAAATTATCAAAAAGTGAAGAAAAAAATAAAATAT
GTAAATATCTAATTGAATTTAGACGATTATAAA
>g8916.t6 Gene=g8916 Length=240
MGNQQQQSSSATSSTTSPTPNITPPFNIQNLPSTGPLPPLFFPSLPTPFMTPFSIPPPPM
PQNLEQLSVEELRAMEGNERKHIEERLKLLKNINTMINASVVLMNQYNMVVANLPSIPQQ
QSNQQQPSTSASSSFSDIIKKNEEKSSSSVSSTSEVKFDTSKVKLEDIGMEDDHLDQPTT
STNKSMPSSSKIKTAETSSSLDSPSSSSSASFIANESGECESNEANEIRKRRLQKFLPTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8916.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 2 | g8916.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 240 | - |
| 5 | g8916.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 137 | - |
| 1 | g8916.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 178 | - |
| 3 | g8916.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 221 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
