General information for g8918.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.
Parent gene
- The parent gene g8918 is located on chr_2: 33809104..33809190 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8918 | g8918.t1 | TSS | g8918.t1 | 33804011 | 33804011 |
| chr_2 | g8918 | g8918.t1 | isoform | g8918.t1 | 33804724 | 33809190 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon1 | 33804724 | 33804803 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS1 | 33804724 | 33804803 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon2 | 33804866 | 33805539 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS2 | 33804866 | 33805539 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon3 | 33805600 | 33805679 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS3 | 33805600 | 33805679 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon4 | 33805742 | 33805911 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS4 | 33805742 | 33805911 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon5 | 33805968 | 33808086 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS5 | 33805968 | 33808086 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon6 | 33808144 | 33808408 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS6 | 33808144 | 33808408 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon7 | 33808463 | 33809106 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS7 | 33808463 | 33809106 |
| chr_2 | g8918 | g8918.t1 | exon | g8918.t1.exon8 | 33809164 | 33809190 |
| chr_2 | g8918 | g8918.t1 | cds | g8918.t1.CDS8 | 33809164 | 33809190 |
| chr_2 | g8918 | g8918.t1 | TTS | g8918.t1 | NA | NA |
Sequences
>g8918.t1 Gene=g8918 Length=4059
ATGGAGTCAAATTCAAAACAACAAAATTTACCAAAACATCCAAGAGAAAATGGAAGCGTG
TTTTCATATTTAACATTTAGTTGGGTATTGCCGTTGTTGCTAAAAGGAAGAAAGAAAACT
TTAGAATTAGAGGACTTGTATCAACCTCTTTCACAACATTTGGCAGCAAATTTAGGAACA
AAATTGGAAAAATCATGGAAAAATGAAGTAAATTCAAAGCGATCAAAAAATAAAAATCCA
AGTTTGATGCGTGCGGGCTTAAAAGTTTTTGGTCCTAATTTAATGTCACATGGATTTTTT
CTTTTATTAATTGAAATGTGTTTCAAAGTCACAATGCCCCTTCTGCTTGGTGGTATATTG
CGGTATTATGGAAATCCAAACAATTCGGATCCTAAAATTGCTTATTTTTATGCTGGCGGG
TTGATTTTGTGCAGCTTTCTTAATGTCATTTGTGCACATGGTTTGATGCTGAGTAATTTG
AATGTTGGAATGAAGATGCGAGTTTCAGCTTGTTCATTGATATATCGAAAATCTTTACGT
CTCAGTAAATCAGCATTACTTAATACAACGAGTGGTCAAGTTGTTAATTTGCTTTCTAAT
GATGTTGGACGATTCGAACTTATTGCTATGTTTGTGCATTATTTATGGGTTGGTCCAATT
GAAACAATTGTGATAGGAGTATTGATGTATATGGAAATTGGAATATCTGCTATAGCTGGT
ATTCTCTTCTTATTGCTCTTTATTCCATTTCAATTCTATCTTGGAAAAAAAACATCGCAA
CTTCGTTTAAGAGTAGCTCTTAGGACTGATGAGAGAGTAAGGTTGATGAATGAGATCATT
CAAGGTATACAAGTTATTAAAATGTACGCTTGGGAAAAACCTTTCGCCAAAGTCGTCTCG
ATGGCTCGTGGTAGAGAAATTCGTGCAATTAGATTTGCATCATGGATACGTGGAATTTTA
CTCTCATTCATTATGTTCAGTTCCCGTGTGTCAATTTTTACAAGTCTTGTGATGTTTGCG
TTGCTCGGCTACACATTAACTGCACAACAAGCATTTGCAGTAACTGCCTATTATAATGTA
TTAAGACAAACAATGACAGTTTTCTTTCCTCAAGCAATTGGTTTTCTTGCAGAAACAATT
GTTAGTGTAAAGAGATTGGAAAAGTTTATGCTCTATGAGGAACTTGATCGTGATTTTCAA
AATACTTCAAAAATGAGTGAAAATGAGAAGCAACCACATGAAAATGGTCACATAAAAGAA
AAATTAAAAAATGTTCAAGAACCCGGCATAAATATGGAAAAAGTGTCTGCAAAATGGAAA
GGTGAAGCGTCAGATCTAACACTTTCAAATATTAACCTTCGAATTCTGCCACACACTGTA
AATGCGATCATTGGTCGAGTTGGTTCTGGAAAATCAAGTTTAGTTCAAGCAATTTTGGGT
GAATTGTCAATTAATAGCGGTAAAATTGAAGTTAATGGAAAAATATCTTTTGCTTCTCAA
GAGGCTTGGCTTTTCTCAAGTTCTGTACGTCAAAATATTCTTTTTGGTTTACCAATGAAT
AAAGTTCGATATCGTGCAGTTGTTAAAGCATGCTCACTAACAAGAGATTTTGAACTATGG
CCCGATGGTGATAAAACAATAGTTGGTGAGCGTGGAATGAGCTTAAGTGGAGGTCAAAAG
GCAAGAATTAATTTAGCTAGATCTGTCTATAGAGAAGCTGACATTTATTTGTTAGATGAT
CAGTTAAGCGCAGTAGATTCGCATGTACAAAGGCATTTGTTTGAAAATTGTATAAAAGGT
TTTCTCAAAGATAAAATCGTAATTTTTGTAACTCATCAACTTTATTACTTGCCAAATGTT
GATCAAATAATATTACTTGATAATGGTAAAGTTCAAGCAAATGGAACTTATGAAAGTTTG
AGAGATACAGGATTAGATTTTACAAAACTTTTACCAGAAGAGGAGGATAAAAAAGCAGAA
AATAATGATGATGATTCAATCTCATATCAAAGACAATTTAGTCGATCTAGCAGTAATACA
AGTAGAGACAGTAAATCAACAAATCAACGACATAATAGTGTCTCTTCACGTGATTCTATT
GAAACAGAAATCAGCACAACTGAGAGAATGCAAGTTGAAGAAAAAAGTTCTGAAGGATCA
ATTAGTTGGAGACATTACAAAGCATACATAAAAGGAACAGGAGGTTACACAACTACTTTA
TTCATTGCATTCATGTTTATTCTTGCACAAGTATTTGCAAGTGCTGGTGATTATTTTTTA
ACTTATTGGGTATCAAAAGAGGAAGAGAGAAGCATTACTGAGTTAACATCATCTCTAAAT
GAAACAGTGCCAACATTCGAAAAAATTGTTCAACAATCTAATGATTCATTCATTGAAACA
GCAAAATATATCTTTGAAGGAGTCGTATATGATAGAAACATTGATATTTACATATTCAGC
GCATTGACAGTTGGTTGTGTAATTATTACATTAAGCAGAAGTTTCATGTTCTTTAATGTG
ACAATGAAAGCAAGTCGTCGTTTACATGATGCAATGTTTTCAGGAATAAGTCATGCGACA
ATGTACTTTTTCAATACAAATCCTTCAGGAAGAATCTTGAATAGATTTAGCAAAGATATA
GGACAAATAGATGAAGTTCTTCCAATGACAATTGTCGATGTTTTACAGATCTTTTTATCA
CTCTCGGGAATTATAATAGTCGTTGCAATTGTCAATCCATACACTTTGATTCCTACATTT
TTCATTGCAATTCTATTCTATTTCATGAGAAGTTTTTATTTAAAATCAAGCAGGAATATA
AAAAGAATAGATGCAACAACAAGATCCCCAATTTTCTCACATCTCTCTGCAACATTAAAT
GGTTTATCAACAATTCGAGCTTTTAATGCTGAAGAGATTTTAACAAAAGAATTTGATTCT
CATCAAGATTTAAATAGCACTGCATTTTATTTGTTTTTGGGATCTTCAAGAGCTTTCGGT
TTTTGGTTAGATTTTACGCTTTGCATCTATATTGCTCTTGTCATTTTAAGCTTCTTTATA
ATGGGCAATTCCGGTGGAAATGTTGGCTTAGCAATCACTCAAGTAATGGGTTTAACTGGA
ATGCTTCAATGGGGTTTACGTCAATCAGCCGAGCTTGAAAATAATATGACAGCCGTTGAA
CGAGTTGTTGAGTACCAGTCAGTAGATCCTGAACCAGATTTTGAGTCGAAACCTGATAAA
AAACCACCAAAAGAATGGCCAGAAAAGGGTCAAATTAAATTCAATAAATTGTCATTGAGT
TACTATCCTGATATGAAAGATAAAGTTTTAAAAGAACTTGAATTTGAAATCAAACCACAA
GAGAAAATTGGTGTGGTAGGCCGAACAGGTGCTGGTAAAAGTTCAATCATCAATGCTTTA
TTCAGATTGTCATATTTAGATGGAAAAATTGAAATCGATTTAAGAGATACACAACAAATA
GGACTTCATGATTTAAGATCAAAAATTTCAATTATTCCTCAAGAACCAGTTTTATTTTCA
AACACTATTCGCTACAATCTTGATCCATTTGATGAATTCGCCGATGATAAATTGTGGAGT
GCACTTGAAGAAGTAAATTTAAAAACACCTATTAAAGAAATGCCAGCAGGATTGAACACA
AAAATTACAGAAGGAGGAACAAATTTCTCTGTCGGTCAAAGGCAACTTGTTTGCTTAGCT
CGTGCCATTTTGAGAGAAAATAAAATTCTTGTGATGGATGAAGCAACAGCAAATGTAGAT
TTAGAGACAGATGCATTAATTCAAACGACAATAAGAAATAAATTTGCTGACTGTACTTTA
ATCACTATAGCTCATAGACTTAATACAATTATGGATAGTGATAGAATATTGGTAATGGAT
GCTGGAAAATGTGTTGAATTTTCATCACCTTATGAGTTGTTAATAAAGAAAGAAGAACCA
AGAGTTTTTTACAAAATGCTAAAAGAAACTCCAAAAACAACTTTTGATATGCTAAAAAAG
ATTGCAGAAGAGACTTATAAAAAGAAAAAGACAGAATAA
>g8918.t1 Gene=g8918 Length=1352
MESNSKQQNLPKHPRENGSVFSYLTFSWVLPLLLKGRKKTLELEDLYQPLSQHLAANLGT
KLEKSWKNEVNSKRSKNKNPSLMRAGLKVFGPNLMSHGFFLLLIEMCFKVTMPLLLGGIL
RYYGNPNNSDPKIAYFYAGGLILCSFLNVICAHGLMLSNLNVGMKMRVSACSLIYRKSLR
LSKSALLNTTSGQVVNLLSNDVGRFELIAMFVHYLWVGPIETIVIGVLMYMEIGISAIAG
ILFLLLFIPFQFYLGKKTSQLRLRVALRTDERVRLMNEIIQGIQVIKMYAWEKPFAKVVS
MARGREIRAIRFASWIRGILLSFIMFSSRVSIFTSLVMFALLGYTLTAQQAFAVTAYYNV
LRQTMTVFFPQAIGFLAETIVSVKRLEKFMLYEELDRDFQNTSKMSENEKQPHENGHIKE
KLKNVQEPGINMEKVSAKWKGEASDLTLSNINLRILPHTVNAIIGRVGSGKSSLVQAILG
ELSINSGKIEVNGKISFASQEAWLFSSSVRQNILFGLPMNKVRYRAVVKACSLTRDFELW
PDGDKTIVGERGMSLSGGQKARINLARSVYREADIYLLDDQLSAVDSHVQRHLFENCIKG
FLKDKIVIFVTHQLYYLPNVDQIILLDNGKVQANGTYESLRDTGLDFTKLLPEEEDKKAE
NNDDDSISYQRQFSRSSSNTSRDSKSTNQRHNSVSSRDSIETEISTTERMQVEEKSSEGS
ISWRHYKAYIKGTGGYTTTLFIAFMFILAQVFASAGDYFLTYWVSKEEERSITELTSSLN
ETVPTFEKIVQQSNDSFIETAKYIFEGVVYDRNIDIYIFSALTVGCVIITLSRSFMFFNV
TMKASRRLHDAMFSGISHATMYFFNTNPSGRILNRFSKDIGQIDEVLPMTIVDVLQIFLS
LSGIIIVVAIVNPYTLIPTFFIAILFYFMRSFYLKSSRNIKRIDATTRSPIFSHLSATLN
GLSTIRAFNAEEILTKEFDSHQDLNSTAFYLFLGSSRAFGFWLDFTLCIYIALVILSFFI
MGNSGGNVGLAITQVMGLTGMLQWGLRQSAELENNMTAVERVVEYQSVDPEPDFESKPDK
KPPKEWPEKGQIKFNKLSLSYYPDMKDKVLKELEFEIKPQEKIGVVGRTGAGKSSIINAL
FRLSYLDGKIEIDLRDTQQIGLHDLRSKISIIPQEPVLFSNTIRYNLDPFDEFADDKLWS
ALEEVNLKTPIKEMPAGLNTKITEGGTNFSVGQRQLVCLARAILRENKILVMDEATANVD
LETDALIQTTIRNKFADCTLITIAHRLNTIMDSDRILVMDAGKCVEFSSPYELLIKKEEP
RVFYKMLKETPKTTFDMLKKIAEETYKKKKTE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 42 | g8918.t1 | CDD | cd18579 | ABC_6TM_ABCC_D1 | 98 | 386 | 2.17625E-109 |
| 44 | g8918.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 430 | 630 | 5.66601E-104 |
| 43 | g8918.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1090 | 1310 | 4.29026E-124 |
| 14 | g8918.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 62 | 396 | 1.1E-17 |
| 12 | g8918.t1 | Gene3D | G3DSA:3.40.50.300 | - | 397 | 679 | 5.4E-75 |
| 13 | g8918.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 707 | 1073 | 1.1E-37 |
| 11 | g8918.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1075 | 1328 | 8.9E-83 |
| 61 | g8918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 715 | - |
| 60 | g8918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 701 | - |
| 5 | g8918.t1 | PANTHER | PTHR24223:SF360 | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659-LIKE PROTEIN-RELATED | 7 | 1345 | 0.0 |
| 6 | g8918.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 7 | 1345 | 0.0 |
| 1 | g8918.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 98 | 365 | 1.2E-27 |
| 4 | g8918.t1 | Pfam | PF00005 | ABC transporter | 448 | 580 | 2.5E-18 |
| 2 | g8918.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 741 | 1039 | 5.2E-33 |
| 3 | g8918.t1 | Pfam | PF00005 | ABC transporter | 1110 | 1257 | 9.5E-29 |
| 23 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 32 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 36 | - |
| 21 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 37 | 97 | - |
| 33 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 123 | - |
| 22 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 124 | 134 | - |
| 41 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 157 | - |
| 20 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 158 | 206 | - |
| 31 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 229 | - |
| 27 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 230 | 234 | - |
| 36 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 235 | 254 | - |
| 18 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 255 | 317 | - |
| 37 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 318 | 344 | - |
| 26 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 345 | 363 | - |
| 38 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 383 | - |
| 15 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 384 | 733 | - |
| 35 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 734 | 753 | - |
| 25 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 754 | 815 | - |
| 40 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 816 | 838 | - |
| 17 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 839 | 885 | - |
| 29 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 886 | 910 | - |
| 24 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 911 | 915 | - |
| 34 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 916 | 933 | - |
| 16 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 934 | 1000 | - |
| 30 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1001 | 1022 | - |
| 28 | g8918.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1023 | 1027 | - |
| 39 | g8918.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1028 | 1046 | - |
| 19 | g8918.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1047 | 1352 | - |
| 59 | g8918.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 555 | 569 | - |
| 58 | g8918.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 1229 | 1243 | - |
| 63 | g8918.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 98 | 377 | 33.638 |
| 65 | g8918.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 430 | 653 | 20.962 |
| 62 | g8918.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 740 | 1054 | 32.7 |
| 64 | g8918.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1326 | 15.82 |
| 56 | g8918.t1 | SMART | SM00382 | AAA_5 | 457 | 630 | 9.9E-6 |
| 57 | g8918.t1 | SMART | SM00382 | AAA_5 | 1119 | 1303 | 1.2E-11 |
| 7 | g8918.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 95 | 390 | 7.19E-34 |
| 10 | g8918.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 426 | 650 | 3.28E-54 |
| 8 | g8918.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 811 | 1071 | 1.57E-51 |
| 9 | g8918.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1082 | 1317 | 8.04E-67 |
| 52 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 120 | - |
| 55 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 157 | - |
| 47 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 229 | - |
| 51 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 255 | - |
| 50 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 318 | 340 | - |
| 46 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 360 | 382 | - |
| 49 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 732 | 754 | - |
| 53 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 816 | 838 | - |
| 54 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 894 | 911 | - |
| 45 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 915 | 934 | - |
| 48 | g8918.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 998 | 1020 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05673 (ATP-binding cassette, subfamily C (CFTR/MRP), member 4)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
