General information for g8937.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Capon-like protein.
Parent gene
- The parent gene g8937 is located on chr_2: 33945679..33947465 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8937 | g8937.t1 | TTS | g8937.t1 | 33942887 | 33942887 |
| chr_2 | g8937 | g8937.t1 | isoform | g8937.t1 | 33943662 | 33947465 |
| chr_2 | g8937 | g8937.t1 | exon | g8937.t1.exon1 | 33943662 | 33944684 |
| chr_2 | g8937 | g8937.t1 | cds | g8937.t1.CDS1 | 33943662 | 33944684 |
| chr_2 | g8937 | g8937.t1 | exon | g8937.t1.exon2 | 33945096 | 33945218 |
| chr_2 | g8937 | g8937.t1 | cds | g8937.t1.CDS2 | 33945096 | 33945218 |
| chr_2 | g8937 | g8937.t1 | exon | g8937.t1.exon3 | 33945280 | 33945435 |
| chr_2 | g8937 | g8937.t1 | cds | g8937.t1.CDS3 | 33945280 | 33945435 |
| chr_2 | g8937 | g8937.t1 | exon | g8937.t1.exon4 | 33945490 | 33945614 |
| chr_2 | g8937 | g8937.t1 | cds | g8937.t1.CDS4 | 33945490 | 33945614 |
| chr_2 | g8937 | g8937.t1 | exon | g8937.t1.exon5 | 33945677 | 33945839 |
| chr_2 | g8937 | g8937.t1 | cds | g8937.t1.CDS5 | 33945677 | 33945839 |
| chr_2 | g8937 | g8937.t1 | exon | g8937.t1.exon6 | 33945927 | 33947465 |
| chr_2 | g8937 | g8937.t1 | cds | g8937.t1.CDS6 | 33945927 | 33947465 |
| chr_2 | g8937 | g8937.t1 | TSS | g8937.t1 | NA | NA |
Sequences
>g8937.t1 Gene=g8937 Length=3129
ATGTCAAATAGTTTTCATCATCGTTCATTAAATACAATTGACAAGATGATGCACAGTAAT
ATTTTGTTTGATAGGGACGCAGGTTATAATACTGGACGCGATAGCAGCTCAATGCAGCGC
AAGAATCGTATTAAACGCATGGAAGAATTGAGTCACTCACTCGATGATGGCCTCAATTCT
CCTGAAGAATATAGTAACAAACGTCACAATAATAGTAACACAACAGCGCGAAGAAATGCC
ATCCAACCATATGATATAGAAGAGGATGAAGATGATTACGGTGATGATGAATTTATGGAC
GATTATTATTATAATAACAGTAAATCCTCATTTGATGGTAGACCGAGAAGCTACAATGAA
AATTATTCAAATTCATACATGTATGACGAATATGATAATTTCTCACGCAATCGCTATAGT
CTAAATGAATCTGCGGCGCCGAAAGGGAATCGCTATCAACAATCGCCTGTCTCTCAGCAA
AAGTACTCATCACTACGAAAGCCTCAACAATCACCAATGAGTAGCAAACATATTCTATTC
AATGACGAAGACGACATTCGTTATGTGAATGATCGCATGAAAAATCAGAAAAAACAACCA
TCATCTTCGTCGTCGACAACTAATACATTAAAAAAGGATTCAACACAGAGAAAGGAAAAA
GAAACTGCTACACGAAAAAAGAATCAGTCGTCATCACAATCACAAGACGATACTGCTGCA
AAATTAGAAAAGCCATCATCGCTTCAGGTGATGAAGGCAAAATTGAAAATACATAACATG
TCAAATGATGATTCTGTCATCAATATTCGTAGTAGTCCAATGATTAAACCAACTTCATTT
CATCGGCATCATTCAGTTGAAGCAAAATTGCCTTCACATCACTCAGATCGTAGCAATATG
TCACCGACTATAATGGAAGAAATTGAATTTGAAATACAAGATGTTGAAACAGAAGGTGAA
AAAGAATTAGAAGAGGAAGCAAAATGTAATCATGATGAAGACCCCAAATCTGAAATTGTG
CTACAAGTAAAAGAAAAAGAAACTAAAAAGAGTGGAAAAGTCAAAGAGAAGGAAAAGAAA
AGTGCAGTACCTTCAACGCCAACCACAAAGAAATCACTAAAAGCTCATTTGAGCAATCAT
AAGAAATTATTTAAAGTACCTGATATTGATCTCAATAATTTGAAGTTTCCCTGCTTTTTT
AGCAGTCATAAGAATATTGCGGCATTAAAGAATAAAAAGAATGATGTCACAAGTAAAAGT
GCAGAAGCACTCAATATCATTGAAACGGAACCTTTATCATCACCACCAACACCATCGAAA
TCCACATCAAAATCATCATCTTCCAAAACACCACCTGCTTCTCCGAAAAAACCTCTAAAG
GGTGACGAAATTACTAAAAATGAAAAGACGAATGAGAAAATTGAAAAACCAATTGATCAA
GAAAAGTTTTTTCCAAAAAATTTTAATAAAGATGGCACGAATCGAGAGAATGTCGAATAT
TTTACAGATAATGAAAACTTTAGTGACGCGGAATTTGAGTCACAAGCAATGAAAGTTGTA
AGAACAGTTGGACAAGCTTTCGAGGTGTGCCACAAATTATCAATGCAGAAAAAGGAAAAT
AATGATGAAAATTCGGAGATTGCATCTGATTTGGACCAATCAGACATTCAAAATTTGAGC
GATTTTGATGAACCGAAAAAGACACTCGATGAAACATCACCAATAATTGACGTTTCACCA
AAAATGCAGCGGCCCTCTCAACTAGAAAATCTCTCTACACCATTAAAAACTCTAATTGCA
CCTGCATCGCCAAATAAAACACTAACGCCTGCTGATGACGGCAATAAAGAGAATGATCGT
GAAATTAATTTACTAAGAGAACAACTTCAGCAACAATCTCAACAAACAAAACAAACACTT
GCACAATTGATATTGGTCAGAGAACAGTTATTGACAGAAACGAATGCAAGAATTGAAGCT
CAGGCCCGTACTCAACAATTATTACAACAAAATAGAGAATTGCTCGAACATATAGCATCT
CTAAGCGGATTAAATGAAACAGATCGAAGTGGATTAACATCAACCAACATTGGGATAGCA
CCGCAGTCTCAACTTCCGCTTTATTTACAAACTCTCTCGCTATTAGGATCAACGTCACCA
ACATCAAATATTCTCTCGCCAACATCACTTTTACCCCAAAAACCAAATGATCTTCTTCAT
AACGAAGATATAAAAAATAATAATAATAACAATTCACTCAAACAAAATATAAATGGATTC
AATTTTGAGAATCTACAAATGCTTCAGACTATAAGTCAACTTCAAAAGCTTGCAATGCCA
CAACAGCAGCAGCAGCAACAACAACAACATCAGGATTTATTTCAAATTAATAATGAACTT
TTGAATAGATTAAAAAATATAAATTTAGGATATGCAATGCAAACAAATAATGTAACTAGT
CCGGTGAGCGCTTCTTTTACACCTAGTCCCACTACAAATTTTCCTTCAGACTCAAATTTC
ATGTTTACTAATGCTGGTGCACAAAATTTACTAAATAATAATAGTAATAACTTTAATAAT
TCAAACAATATGAACAATCATCCTCCCATTGGTTCGCTGAATCGAAGTTCATCTACTTAT
TCCACAATAAGTCCAATTGGCGATAGTTTTGATAGATCTTTGGATAATATAAATAACAAC
AACATTAATTCAAGCAATGAATCGCCCTTCATTAAGCCACTTTCTCAAGTTGGTTGCGTG
CCAACACTTGATAATGAAGGAAAAGTCAAAGTACTGGTACCTATCGAACATTCACCATTT
GACATGAGAGCAAGAAGCAGTGAACCATATGATACAAGACAAAATAGTGGCAGTGCAGAT
GATAAAAATGAATTAGGAGGAAATTTACAGCGACCTCAAAAGCCCGTTCTCACACCAATT
CTCAGTCGAGGAGAGAAAAAAAATCATTCAGTAACATTGAAAGTGACAGATGAAGCAGGC
AACGTAAATGTCATGAATCAGAGAAAATTGCCAGCACAACCAAGTTTTATAACAAGAAGC
ACAAGTGAAAAAGTACCAAATCGCAGTCAAGTTAATCGTACAATTTGGACTCGTCATACA
ACAAAATAA
>g8937.t1 Gene=g8937 Length=1042
MSNSFHHRSLNTIDKMMHSNILFDRDAGYNTGRDSSSMQRKNRIKRMEELSHSLDDGLNS
PEEYSNKRHNNSNTTARRNAIQPYDIEEDEDDYGDDEFMDDYYYNNSKSSFDGRPRSYNE
NYSNSYMYDEYDNFSRNRYSLNESAAPKGNRYQQSPVSQQKYSSLRKPQQSPMSSKHILF
NDEDDIRYVNDRMKNQKKQPSSSSSTTNTLKKDSTQRKEKETATRKKNQSSSQSQDDTAA
KLEKPSSLQVMKAKLKIHNMSNDDSVINIRSSPMIKPTSFHRHHSVEAKLPSHHSDRSNM
SPTIMEEIEFEIQDVETEGEKELEEEAKCNHDEDPKSEIVLQVKEKETKKSGKVKEKEKK
SAVPSTPTTKKSLKAHLSNHKKLFKVPDIDLNNLKFPCFFSSHKNIAALKNKKNDVTSKS
AEALNIIETEPLSSPPTPSKSTSKSSSSKTPPASPKKPLKGDEITKNEKTNEKIEKPIDQ
EKFFPKNFNKDGTNRENVEYFTDNENFSDAEFESQAMKVVRTVGQAFEVCHKLSMQKKEN
NDENSEIASDLDQSDIQNLSDFDEPKKTLDETSPIIDVSPKMQRPSQLENLSTPLKTLIA
PASPNKTLTPADDGNKENDREINLLREQLQQQSQQTKQTLAQLILVREQLLTETNARIEA
QARTQQLLQQNRELLEHIASLSGLNETDRSGLTSTNIGIAPQSQLPLYLQTLSLLGSTSP
TSNILSPTSLLPQKPNDLLHNEDIKNNNNNNSLKQNINGFNFENLQMLQTISQLQKLAMP
QQQQQQQQQHQDLFQINNELLNRLKNINLGYAMQTNNVTSPVSASFTPSPTTNFPSDSNF
MFTNAGAQNLLNNNSNNFNNSNNMNNHPPIGSLNRSSSTYSTISPIGDSFDRSLDNINNN
NINSSNESPFIKPLSQVGCVPTLDNEGKVKVLVPIEHSPFDMRARSSEPYDTRQNSGSAD
DKNELGGNLQRPQKPVLTPILSRGEKKNHSVTLKVTDEAGNVNVMNQRKLPAQPSFITRS
TSEKVPNRSQVNRTIWTRHTTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g8937.t1 | Coils | Coil | Coil | 305 | 325 | - |
| 22 | g8937.t1 | Coils | Coil | Coil | 615 | 646 | - |
| 20 | g8937.t1 | Gene3D | G3DSA:2.30.29.30 | - | 493 | 539 | 3.1E-6 |
| 10 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 92 | - |
| 15 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 80 | - |
| 7 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 182 | - |
| 19 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 177 | - |
| 8 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 247 | - |
| 11 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 211 | - |
| 5 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 226 | - |
| 4 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 242 | - |
| 16 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 374 | - |
| 14 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 364 | - |
| 18 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 490 | - |
| 12 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 453 | - |
| 13 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 490 | - |
| 6 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 587 | - |
| 9 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 942 | 991 | - |
| 17 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 963 | - |
| 3 | g8937.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1010 | 1042 | - |
| 1 | g8937.t1 | PANTHER | PTHR11232:SF17 | CARBOXYL-TERMINAL PDZ LIGAND OF NEURONAL NITRIC OXIDE SYNTHASE PROTEIN | 511 | 1037 | 6.0E-37 |
| 2 | g8937.t1 | PANTHER | PTHR11232 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER | 511 | 1037 | 6.0E-37 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
