Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g8960 | g8960.t11 | TSS | g8960.t11 | 34204388 | 34204388 |
chr_2 | g8960 | g8960.t11 | isoform | g8960.t11 | 34204416 | 34214913 |
chr_2 | g8960 | g8960.t11 | exon | g8960.t11.exon1 | 34204416 | 34204418 |
chr_2 | g8960 | g8960.t11 | exon | g8960.t11.exon2 | 34205499 | 34205566 |
chr_2 | g8960 | g8960.t11 | cds | g8960.t11.CDS1 | 34205523 | 34205566 |
chr_2 | g8960 | g8960.t11 | exon | g8960.t11.exon3 | 34213006 | 34213280 |
chr_2 | g8960 | g8960.t11 | cds | g8960.t11.CDS2 | 34213006 | 34213280 |
chr_2 | g8960 | g8960.t11 | exon | g8960.t11.exon4 | 34213336 | 34213874 |
chr_2 | g8960 | g8960.t11 | cds | g8960.t11.CDS3 | 34213336 | 34213874 |
chr_2 | g8960 | g8960.t11 | exon | g8960.t11.exon5 | 34213936 | 34214157 |
chr_2 | g8960 | g8960.t11 | cds | g8960.t11.CDS4 | 34213936 | 34214157 |
chr_2 | g8960 | g8960.t11 | exon | g8960.t11.exon6 | 34214230 | 34214913 |
chr_2 | g8960 | g8960.t11 | cds | g8960.t11.CDS5 | 34214230 | 34214277 |
chr_2 | g8960 | g8960.t11 | TTS | g8960.t11 | NA | NA |
>g8960.t11 Gene=g8960 Length=1791
AAAGTCTTTCTACGGCCACAACCGAAAATGTTTGGTCTTTGGTATCTTTCACTCGCAGTT
AAAGAGATTTGTAACAAATCCGAAATGGTTGACGCTGCAGTACTTGAGAAATTGGAATCA
GGCTTTGCCAAGCTCCAAGCCTCTGACTCGAAATCATTGCTTAAAAAGTATTTGACCAAG
GAAGTCTTTGATAATCTTAAGAACAAGAAGACCCCAACATTTGGTTCAACTTTGCTTGAT
GTCATCCAATCTGGTTTAGAAAACCACGACTCTGGCGTCGGAATTTACGCACCAGATGCC
GAGGCTTACACAACTTTCGCTGAATTGTTTGACCCAATCATTGAAGACTACCATGGTGGA
TTCAAGAAGACCGACAAGCATCCAGCAAAGGACTTTGGTGATGTAAATGCATTTGGAGAT
TTGGATCCAACTGGTGAATTCGTTGTCTCAACTCGTGTCCGTTGCGGTCGCTCAATGGAA
GGATATCCATTCAATCCATGCTTGACTGAAGCACAATACAAAGAAATGGAACAAAAGGTT
TCAACCACATTGTCAGGCTTGGAAGGTGAATTGAAGGGCAAATTCTACCCATTGACTGGC
ATGGACAAAGCTACTCAACAACAACTCATCGATGACCATTTCTTGTTCAAAGAAGGTGAT
CGCTTCTTGCAAGCTGCCAATGCTTGCCGCTATTGGCCATCAGGTCGCGGTATCTACCAC
AATGATGCCAAGACTTTCCTTGTCTGGTGCAATGAAGAAGATCACTTGCGTATCATTTCA
ATGCAAATGGGTGGCAATCTTGGTGAAGTTTTCCGTCGTTTGACAACTGCCGTTAATGAC
ATTGAGAAGCGTATTCCATTCAGCCACAACGACCGCTTGGGATTCCTCACATTCTGCCCA
ACCAACTTGGGAACAACCATCCGTGCATCAGTTCACATTAAGGTTCCAAAATTGGCTGCC
AACAAAGCTCGTCTTGAGGAAGTTGCTTCCAAATACAATTTGCAAGTTCGTGGCACACGC
GGAGAACATACAGAGGCTGAAGGTGGCATTTATGATATTTCAAACAAGAGACGTATGGGC
TTGACTGAATTCCAAGCTGTCAAGGAGATGTACGATGGAATTACTGAAATCATCAAGATT
GAAAAGTCATTGTAAAGTGTGTAAAAGCAAAAACAAAACAACCCAACTTAAAATTGTCAT
CTATTTTCAAAATTATACATTAATATAAAAAACACATATACACACATGAATTAACAACAA
AACTCAATCGTCATTTGCAATGGCGATCAAAGATTTGGAAATCTTTCATCAGTGATCTTT
ATTCTTGTTTAATTTAATTGATAAAAAAATGTGTCCTATTCTCTCCATCTCAGTATAAGT
TTGATGTGATTGATCACAAGCATTAAGAATATTTTGGAATAAAATGTGAATTTAACATCT
ATTACCACATACAGCACATGCAAACAAGAAGTTAATTAAATAAAAACCGTAAATTTTAAG
TTTAATCATGTGACTTTTTATTACATCTTATTTCAGTAAGCAACAATAGTGTGTTATAAA
ACAAAATGATAAGATGCACTCAAAAGCACAATTTTATCATCATCAAAAAAGAGTTTTCAT
TTAAGTTGTCAACGTACTTGTCAAACATGCGATAAAATAAGATGTTAATCTCTCTGGTTT
ACTAATGTGAAAATTTATTAAAAACAATGTTTTTGTTTTAAAAGAAAATTAATTTTTATT
TGTCAACATGCTTGTCAAAATTAAAATGCAGCAAATTAAAAATTTAAACTC
>g8960.t11 Gene=g8960 Length=375
MFGLWYLSLAVKEICNKSEMVDAAVLEKLESGFAKLQASDSKSLLKKYLTKEVFDNLKNK
KTPTFGSTLLDVIQSGLENHDSGVGIYAPDAEAYTTFAELFDPIIEDYHGGFKKTDKHPA
KDFGDVNAFGDLDPTGEFVVSTRVRCGRSMEGYPFNPCLTEAQYKEMEQKVSTTLSGLEG
ELKGKFYPLTGMDKATQQQLIDDHFLFKEGDRFLQAANACRYWPSGRGIYHNDAKTFLVW
CNEEDHLRIISMQMGGNLGEVFRRLTTAVNDIEKRIPFSHNDRLGFLTFCPTNLGTTIRA
SVHIKVPKLAANKARLEEVASKYNLQVRGTRGEHTEAEGGIYDISNKRRMGLTEFQAVKE
MYDGITEIIKIEKSL
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
12 | g8960.t11 | CDD | cd07932 | arginine_kinase_like | 28 | 375 | 0.0 |
9 | g8960.t11 | Gene3D | G3DSA:1.10.135.10 | Transferase Creatine Kinase | 20 | 114 | 3.0E-38 |
8 | g8960.t11 | Gene3D | G3DSA:3.30.590.10 | Glutamine synthetase/guanido kinase | 117 | 375 | 3.4E-120 |
3 | g8960.t11 | PANTHER | PTHR11547:SF38 | ARGININE KINASE-RELATED | 25 | 374 | 5.2E-154 |
4 | g8960.t11 | PANTHER | PTHR11547 | ARGININE OR CREATINE KINASE | 25 | 374 | 5.2E-154 |
1 | g8960.t11 | Pfam | PF02807 | ATP:guanido phosphotransferase, N-terminal domain | 39 | 106 | 7.7E-30 |
2 | g8960.t11 | Pfam | PF00217 | ATP:guanido phosphotransferase, C-terminal catalytic domain | 166 | 374 | 2.5E-86 |
7 | g8960.t11 | ProSitePatterns | PS00112 | Phosphagen kinase active site signature. | 290 | 296 | - |
11 | g8960.t11 | ProSiteProfiles | PS51509 | Phosphagen kinase N-terminal domain profile. | 25 | 110 | 26.463 |
10 | g8960.t11 | ProSiteProfiles | PS51510 | Phosphagen kinase C-terminal domain profile. | 138 | 375 | 88.499 |
5 | g8960.t11 | SUPERFAMILY | SSF48034 | Guanido kinase N-terminal domain | 37 | 119 | 3.4E-33 |
6 | g8960.t11 | SUPERFAMILY | SSF55931 | Glutamine synthetase/guanido kinase | 116 | 374 | 6.17E-105 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0046314 | phosphocreatine biosynthetic process | BP |
GO:0016301 | kinase activity | MF |
GO:0004111 | creatine kinase activity | MF |
GO:0003824 | catalytic activity | MF |
GO:0016772 | transferase activity, transferring phosphorus-containing groups | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.