Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Arginine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8960 g8960.t2 TSS g8960.t2 34204388 34204388
chr_2 g8960 g8960.t2 isoform g8960.t2 34204416 34213278
chr_2 g8960 g8960.t2 exon g8960.t2.exon1 34204416 34204666
chr_2 g8960 g8960.t2 exon g8960.t2.exon2 34205499 34205566
chr_2 g8960 g8960.t2 cds g8960.t2.CDS1 34205523 34205566
chr_2 g8960 g8960.t2 exon g8960.t2.exon3 34213006 34213278
chr_2 g8960 g8960.t2 cds g8960.t2.CDS2 34213006 34213276
chr_2 g8960 g8960.t2 TTS g8960.t2 NA NA

Sequences

>g8960.t2 Gene=g8960 Length=592
AAAGTACGTAAAATTATTTTTCCATTAAAAGTTAAAGCAATTTAGCATTAATTTTCGACT
GATAAGTTTCATATTGCACAGTTATTTCATTATAAGTCATATATACATCAATTCATTATT
AAAACTTGTTGAATTTTGGACTTTAACACGCTTGCAAAAAAGTTGAAAGATAATTTTTGG
GAAAAAATCGATTGATATTTTATTGGCACATAAACACGAAATTCGCAAATATTCTGAATC
ATTGTCGTCAAGTCTTTCTACGGCCACAACCGAAAATGTTTGGTCTTTGGTATCTTTCAC
TCGCAGTTAAAGAGATTTGTAACAAATCCGAAATGGTTGACGCTGCAGTACTTGAGAAAT
TGGAATCAGGCTTTGCCAAGCTCCAAGCCTCTGACTCGAAATCATTGCTTAAAAAGTATT
TGACCAAGGAAGTCTTTGATAATCTTAAGAACAAGAAGACCCCAACATTTGGTTCAACTT
TGCTTGATGTCATCCAATCTGGTTTAGAAAACCACGACTCTGGCGTCGGAATTTACGCAC
CAGATGCCGAGGCTTACACAACTTTCGCTGAATTGTTTGACCCAATCATTGA

>g8960.t2 Gene=g8960 Length=105
MFGLWYLSLAVKEICNKSEMVDAAVLEKLESGFAKLQASDSKSLLKKYLTKEVFDNLKNK
KTPTFGSTLLDVIQSGLENHDSGVGIYAPDAEAYTTFAELFDPII

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8960.t2 Gene3D G3DSA:1.10.135.10 Transferase Creatine Kinase 20 105 0.000
2 g8960.t2 PANTHER PTHR11547:SF38 ARGININE KINASE-RELATED 24 105 0.000
3 g8960.t2 PANTHER PTHR11547 ARGININE OR CREATINE KINASE 24 105 0.000
1 g8960.t2 Pfam PF02807 ATP:guanido phosphotransferase, N-terminal domain 39 105 0.000
6 g8960.t2 ProSiteProfiles PS51509 Phosphagen kinase N-terminal domain profile. 25 105 23.142
4 g8960.t2 SUPERFAMILY SSF48034 Guanido kinase N-terminal domain 22 105 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046314 phosphocreatine biosynthetic process BP
GO:0016301 kinase activity MF
GO:0004111 creatine kinase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed