General information for g8970.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dynactin subunit 5.
Parent gene
- The parent gene g8970 is located on chr_2: 34263618..34265158 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8970 | g8970.t6 | TSS | g8970.t6 | 34263312 | 34263312 |
| chr_2 | g8970 | g8970.t6 | isoform | g8970.t6 | 34263387 | 34264874 |
| chr_2 | g8970 | g8970.t6 | exon | g8970.t6.exon1 | 34263387 | 34263474 |
| chr_2 | g8970 | g8970.t6 | cds | g8970.t6.CDS1 | 34263387 | 34263474 |
| chr_2 | g8970 | g8970.t6 | exon | g8970.t6.exon2 | 34263618 | 34264441 |
| chr_2 | g8970 | g8970.t6 | cds | g8970.t6.CDS2 | 34263618 | 34263865 |
| chr_2 | g8970 | g8970.t6 | exon | g8970.t6.exon3 | 34264508 | 34264874 |
| chr_2 | g8970 | g8970.t6 | TTS | g8970.t6 | 34265025 | 34265025 |
Sequences
>g8970.t6 Gene=g8970 Length=1279
ATGGAAATTTGTGACATGTATTATAATAAAGATGAGTTTGTAGAAACTGCATCAGGAAAT
AAAGTTCGTATAAAGTTAGTCAAACAGAGTAAAGTAATAGTTGATAAGGGAGCAATAATT
CGTGGAGATCTGGCAAATGTGAGAACTGGAAGGTATTGTGTGATTTCAAAAAATGCAGTA
GTTAGACCACCATTTAAACAATTTAGCAAAGGAGTTGCTTTCTTCCCTCTTCATATTGGA
GATCATGTTTATATTGGTGAAAATTCTGTTGTGAGTGCTGCAAGTATTGGATCTTATGTT
TATATAGGCAAAAATGTTGTGATTGTAAGTTCTTGAAGTTGATTGAAAGAAAAACGAGAC
TGAAAAGTGTCCGCCTTAAGTCGGATTACTTTAGCGCATTTTGGTGCCTAGATCAGTGTA
TGTTGACAAATTACAGAATTATTAGATTCGTTTGAAAAATAGATTTACAGTTTAAAATAA
TTTGATCGAAATGAATTAAGAATATAGGAAAAATCATGTTTATAAAATTTTGATGTATGA
AAGTACGGCGAGCTTTTTTAATTGAAGTTCAATTTACCAGAGTCCGAAACGGTTTTACAA
ATAACTTAAAATCAACTAAACCTTATTCGATTAAAAATAAAAGCCTAATCGATTAAATTT
TAGTTGGTTTTCCGTTGAAAATTTCAATTGAATAAGTTTTAGTTGATTTCTAATTATTTT
CAAATAAAATACCAAACGGTTTCGTACTCTGCAATTTCCAGAATCTTACAATAAATTTTG
TTAACTTGAAAATAACGGTTGAGTAAGATTCAAAATATTTGAAGTTCCAAGATTTGCCGT
TGGTGGCGCTGCAATCGTTTTTGCGCGACAAAAAATTTTTGTTTACAAATTTCAATTTGG
AAATTTAAATTCCACAAATCAAACACAACAAACCGGAAGTCGCTAGCTATTGTAGTTTTC
GAGATCTCGCACCTCAGCCAGCCAGCCAGCCAGCCAGCCAAAGTGAAGATATAAGCGGCA
TTGTTGTTCCAAAAATGCGCTAAAAATTTTAAAAATCTCTTGATTTTAGGGACGAAGATG
TGTAATTAAAGATTGTACTATTATTGAAGATAACTCAGTATTGCCTCCTGAAACAACACT
AGCAAGTTTTATGAAATTTAATAATGATGGAACAATTGAGGGCGGACAGGGAACTGAATC
GGTTCCTGCGGCTATGCAAGACTTAATGGTTGATTTTACTAAATCATATTATGATCATTT
TTTAATGGCTAAATCTTAA
>g8970.t6 Gene=g8970 Length=111
MEICDMYYNKDEFVETASGNKVRIKLVKQSKVIVDKGAIIRGDLANVRTGRYCVISKNAV
VRPPFKQFSKGVAFFPLHIGDHVYIGENSVVSAASIGSYVYIGKNVVIVSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8970.t6 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 16 | 111 | 0.0e+00 |
| 2 | g8970.t6 | PANTHER | PTHR46126 | DYNACTIN SUBUNIT 5 | 1 | 108 | 0.0e+00 |
| 1 | g8970.t6 | Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 77 | 108 | 1.5e-05 |
| 3 | g8970.t6 | SUPERFAMILY | SSF51161 | Trimeric LpxA-like enzymes | 31 | 109 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
