General information for g8971.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-CoA carboxylase.
Parent gene
- The parent gene g8971 is located on chr_2: 34268266..34272771 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8971 | g8971.t1 | TTS | g8971.t1 | 34265011 | 34265011 |
| chr_2 | g8971 | g8971.t1 | isoform | g8971.t1 | 34265158 | 34272771 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon1 | 34265158 | 34265313 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS1 | 34265158 | 34265313 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon2 | 34265371 | 34265552 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS2 | 34265371 | 34265552 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon3 | 34265612 | 34265909 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS3 | 34265612 | 34265909 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon4 | 34265964 | 34266745 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS4 | 34265964 | 34266745 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon5 | 34266813 | 34269263 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS5 | 34266813 | 34269263 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon6 | 34269339 | 34271983 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS6 | 34269339 | 34271983 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon7 | 34272054 | 34272308 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS7 | 34272054 | 34272308 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon8 | 34272452 | 34272671 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS8 | 34272452 | 34272671 |
| chr_2 | g8971 | g8971.t1 | exon | g8971.t1.exon9 | 34272726 | 34272771 |
| chr_2 | g8971 | g8971.t1 | cds | g8971.t1.CDS9 | 34272726 | 34272771 |
| chr_2 | g8971 | g8971.t1 | TSS | g8971.t1 | 34273716 | 34273716 |
Sequences
>g8971.t1 Gene=g8971 Length=7035
ATGTTAAAACGGCGACCAAGTAAGCGATTTGTGCTCGCCGAAACAGGTGAAGAAACAGCT
TGGAATACAACAACTGATAATGATACATCTTCGAGCGGTGCAAATACACCTCAAATTCAA
ATCGATGCTGGAATTTCAGCTGAAACGACAGTTGTAGAAGAAAAACCGACTACTTCAGTT
ACAACTTCTACAGAAAGTAAACAGATATCACAACAACAACAACAACGACTTCTCTCTGTT
CCACAAACGATCAAGTCGGGAATGAAACCAAGTATGAGTCATGGAACAGGTTTAGGAAGA
GAATATGGTGATAGAGATTTTCTAATTGCCACAACAGAAGAATTTGTAAAGAGATTTGGT
GGCAATCGCGTCATCAATAAAGTTCTTATAGCAAATAATGGAATTGCTGCTGTTAAATGT
ATGCGTTCTGTTCGTCGATGGTCTTATGAAATGTTTAAAAATGAACGAGCTGTTCGTTTT
GTTGTAATGGTGACACCAGAGGACTTGAAAGCGAATGCAGAATATATCAAAATGGCTGAT
CATTATGTGCCTGTACCTGGTGGCAGTAACAATAACAATTACGCTAATGTCGAACTTATT
GTTGACATTGCTTTGCGAACACAAGTTCAAGCAATTTGGGCTGGATGGGGGCATGCTTCA
GAAAATCCAAAATTACCAGAATTATTGCATAAACATGGACTTGTTTTTCTTGGACCACCA
GAGAGAGCGATGTGGGCACTTGGTGATAAAGTTGCCTCATCAATTGTTGCTCAAACAGCT
GAAATTCCAACTTTACCATGGAGCGGCTCAGAATTAAAAGCGCAATATAGTGGCAAGAAA
ATAAAAATTTCAACTGAATTATTTAATCGTGGATGTGTCAATTCAGCAGAACAAGGATTA
GTTGCTGCAAATAAAATTGGTTTTCCAGTTATGATTAAGGCCTCAGAAGGTGGTGGTGGA
AAAGGTATTCGTCGTGTTGATTCTGCTGATGAATTTCCTGCTCTCTTTAGACAAGTACAA
GCAGAAGTGCCTGGATCGCCTATTTTTGTTATGAAACTTGCACGAGGAGCACGTCATCTT
GAAGTTCAATTACTTGCTGATCAATACGGAAATGCTATCAGTTTATTTGGCAGAGATTGC
AGTATTCAGCGTCGTCATCAAAAAATTATCGAAGAAGCGCCTGCTGTTATTGCATTGCCT
GAGATTTTTGAAGATATGGAAAAATCGGCTGTTCGTTTGGCAAAAATGGTAGGGTATGTT
AGTGCTGGAACTGTTGAATATCTTTATGAACCAACTGAAGGAAAATATTTTTTCCTTGAA
CTCAATCCACGTTTGCAAGTAGAGCATCCATGTACAGAAATGGTAGCTGATGTTAATTTA
CCAGCTTGTCAACTTCAAATTGGAATGGGAATTCCACTTTATCGCATCAAAGACATTCGT
CTACTTTATGGTGAGAGTCCTTGGGATTCAACTGTTATTGATTTTGACAATCCTCCAAAC
AAACCGAGACCATGGGGACATGTCATTGCTGCAAGAATTACATCAGAAAATCCTGATGAA
GGATTTAAACCAAGCTCTGGAACTGTTCAAGAATTAAATTTCCGTTCAAGCAAAAATGTT
TGGGGATACTTCAGTGTAGCTGCTTCAGGTGGTTTGCATGAATTTGCTGATTCACAATTC
GGCCATTGTTTCTCATGGGGTGAAAATCGTAATCAAGCTCGAGAAAATCTTGTTATTGCA
TTAAAAGAATTATCGATTCGTGGTGATTTTAGAACAACAGTTGAATATTTAATTACACTT
CTTGAAGCTAATCGTTTTCTTGATAATACAATCGACACAGCATGGCTTGATGCTTTAATT
GCTGAAAGAGTAAAATCTGAAAAACCCGATGTTCTTTTGGGTGTTATTTGTGGCAGTCTT
CATATTGCTGATCGACAAATTACTGAAGCATTTACCAATTTCCAAACATCATTAGAAAAA
GGACAAATTCAAGCAGCAAATACGCTTACTAATGTAATTGAAGTTGAACTCATTTCTGAA
GCAATCAAATACAAAGTTCAAGCAGTCAAGAGTGGTGAAAATTCTTACTTTTTGGTAATG
AATGGATCATTTAAAGAAGTCGATGTTCATCGTTTACCAGATGGTGCAATGTTGATTTCA
TTAGATGGTGCGAGTTATACCACTTATATGAAAGAAGAAGTTGATCGATATCGCATAATA
ATTGGCAATCAAACATGTGTTTTCCAAAAAGAAAACGATCCTTCACTTTTGCGCAGTCCA
AGTGCTGGTAAACTTATTAATCTTCTCGTTGAAGATGGTTCACATGTTAATAAGGGACAA
CCATTTGCTGAGATTGAAGTTATGAAAATGGTTATGACATTGACCAGTTCTGAAGATGGA
ATTATTACATTTGTCAAAAGACCAGGGGCTGTCCTTGAAGCTGGTTCATTGCTTGGATCT
ATGGAACTTGATGATCCATCACTTGTTACAAAAGCTCAATTGTATAGAGGTACATGGCCA
GTTAATGACAATATTCATGTTCCAGAGAAATTAAATCGTGTGCACAATAATTATAAGACA
ATACTTGAAAATACTCTTGCTGGTTATTGCTTGCCTGATCCATATAATGCACCAAGATTA
AGAGAAATTATTGAAAAGTTTATGCAAAGTTTAAGAGATCCTTCTCTACCATTGCTTGAA
TTACAGGAAGTCATTGCTAGCATTTCAAATCGCATACCTGTATCAGTAGAGAAGAAAATT
CGTAAATTAATGACACTTTATGAACGCAACATTACTAGTGTATTAGCTCAATTTCCGTCT
CAACAAATTGCATCTGTAATTGATATGCATGCAGCTACATTACAAAGACGAGCAGATCGT
GATGTATTCTTTTTAACAACGCAAGGCATTGTTCAATTAGTACAACGTTATCGTAACGGA
ATTCGAGGACGAATGAAGGCAGCAGTGCATGAGCTTTTAAAGCAATATTATTCAGTCGAA
AGTCAATTCCAACATGGACATTATGATAAATGTGTAGCACAAATTCGAGAAGCCAATAAG
GATAATATGAGAACCGTTGTAAACACCATTTTCTCGCATAGTCAAGTTGCAAAGAAAAAT
TTACTTGTGACCCTCTTAATTGACCATTTGTGGAGCAATGAACCAGGTTTAACAGACGAA
CTAGCCACAACCTTGAGTGAACTTACATCATTAAATCGTGCCGAACATTCACGTGTTGCT
TTGCGTGCACGTCAAGTTTTGATTGCTGCACATCAACCGGCATATGAATTGCGTCACAAT
CAGATGGAATCAATTTTCTTATCAGCAGTTGACATGTATGGTCATGATTTTCATCCTGAA
AATTTGCAACGTTTGATTTTATCTGAGACATCAATTTTTGATATTCTTCATGATTTCTTC
TATCATACAAATCGTGCCGTTTGTAATGCTGCTCTTGAAGTCTATGTTCGCAGAGCTTAT
ACATCATACGATCTAACATGCTTGCAACATCTTGAATTGAGTGGTGAAGTGCCTCTTGTT
CATTTTCAATTTCTTTTGCCAACTGCACATCCTAATCGTGTAACAATTGATGGAACAATT
AGTGGAAGTTTCATGAGAACTGGTTGTATGGCAGCTTTTGATTCATTCGATCATTTCCAA
CAATATTCTGATGAAATTTTGGATTTATTAGAAGATTTATCATCACCACATTATATCAAT
TCAAAAGCCTTAGTTGACGCAGTTGATGCTGTTGAGTCAGTCTCTGATGATCGTCGCATG
AGTACATCGATTAATGTCTCACTCTCTGGTGATGCATCAATTCGTTCAGAAGGAGATCCA
TCAACTACAAAATCTTTAGAGCCAATTCATATTTTGAGCATTGCTGTAAGAGATTTAGGT
GATATGGATGATGCACAAATGGGAAATCTTTTTGGATCTTTCTGTTTACAACATCGTGAT
GAATTGCTTACTCGACGTGTACGAAGAATTACATTTGCAGCATTGAAAAAACGTCAATTT
CCAAAATTCTTTACTTATCGTGCAAGAGATTTATTTGAAGAAGATCGTATTTATCGTCAT
TTAGAACCAGCATGTGCATTCCAATTGGAATTAAATAGAATGCGCACATATGATCTTGAA
GCATTGCCTACAGCTAATCAAAAAATGCATTTATATCTTGGACGTGCAAAGACAGCAAAA
GATCAAACTCTTTCAGATTATCGCTTCTTTATTCGTTCAATTATTCGACATTCTGATTTA
ATCACAAAAGAAGCTTCATTTGAATATCTTCAAAATGAAGGCGAACGAGTACTCTTAGAG
TCAATGGATGAGCTTGAAGTTGCTTTCTCACATCGTTATGCGAAATTCACAGATTGTAAT
CACATTTTCCTTAATTTTGTTCCATGCGTTATTATGGACCCTGCAAAGATTGAAGAATCA
GTTACAAAAATGATTATGCGTTATGGTCCACGTTTATGGAAATTGCGTGTATTACAAGCT
GAACTGAAATTGATTATTCGTCCAACACCACAATCAGAAACAACTACAATTCGTTTATGT
ATTGCAAATGACTCAGGTTATTTCTTAGATATTTGCATGTATCAAGAAGTCACCGAAGGT
GGAGTGATTAAATTTAACGCTTATGGTAAAAGACAAGGACCGCTTCATCAATTGCCAATT
TCGACGCCATACATGACAAAAGATTATTTGCAACAAAAGAGATTCCAAGCACAACAAAAT
GGTACAACTTATTGTTTTGATTTTCCCGATATGTTTAGGCAAATGACTGAAAAATTATGG
AAGCAATTCTCAAGAGATAGACCAAGTGAAGATATTCGTATACCTGAGAAAGTTTTACTC
GAATGCAATGAATTAGTATTAGATGGTGATACAATGGAAGAAGTTCAAAGATTACCTGGT
GAAAATGACATTGGCATGGTTGCATGGCGAATTCGATTAGCTACACCAGAATTTCCAGAT
GGTCGTGACATTATTGTTATTGCTAATGATTTGACATCATATATCGGTTCATTTGGACCA
CAAGAAGATATGGTCTTTCAAAAGGCATCAGAGATTGCACGTGAGAGAAAAATTCCAAGA
ATTTACATTTCATGCAATAGTGGAGCTCGTATTGGTTTAGCTGAAGAAGTGAAATCAATG
TTTAAAATTGCATGGGAAGATCCAGAAGAACCAGAAAAGGGTTTCAAATATCTTTATTTG
ACAACTGAAGATTATAGTAAAATTGCAAATCAAAATTCAGTTCGTGCAATTCTTATTGAA
GATGAAGGTGAACCACGTTATAAAATTACTGACATTATTGGACAAAAAGATGGTATTGGT
GTGGAAAATTTACGTTATGCTGGTATGATTGCAAGTGAAACATCAAAAGCATATGATGAT
ATTGTGACAATCTCTATGGTTACTTGTCGTACAATTGGTATTGGATCTTATTTAGTTCGT
CTTGGACAACGTGTTATTCAAATTGAAAATTCTCACATTATTTTAACCGGTTATGCTGCC
TTAAATAAGCTTCTTGGACGAAAAGTCTATGCTTCAAATAATCAACTTGGTGGAACACAA
ATTATGCATAATAATGGTGTCTCACATAAAACTGATGCTTGCGATTTGGATGGCATTTAT
ACAATTTTGCATTGGCTTTCTTATATTCCTGATTGTCGTGGTGGAAAGTTGCCAATGGTA
ATTCCAAACGATCCAATTAATCGCAATATTGGCTACATTCCAACAAAAGCACCATACGAT
CCAAGATGGATGCTTGCTGGTCGTGTAAATCCAGTGAATCACAACGAATGGGAGACTGGT
TTCTTCGATCGAAGTAGTTTTTCAGAAATTATGGAGCCTTGGGCTCAAACAGTCGTCACT
GGTCGTGCACGATTGGGAGGAATTCCAGTTGGTGTAATTGCAGTAGAAACAAGAACAGTT
GAAGTCACAATACCTGCTGATCCTGCAAACTTAGATTCCGAGTCAAAGACAGTTCAACAG
GCAGGTCAAGTTTGGTATCCAGATTCATCATATAAAACAGCACAAGCAATTAAGGACTTT
GATCGTGAGGAACTCCCTCTTTTCATCTTTGCAAATTGGCGTGGTTTCTCAGGTGGACAA
AAAGATATGTATGAACAAATTGTCAAATTTGGTGCATATATTGTTGATGGTTTAAGAGAA
TACAAACAACCAGTGATTATTTATTTGCCACCAAATGCTGAATTGCGAGGAGGTGCCTGG
GCTGTACTCGATTCTTTGATAAATCCAAGATATATCGAGACATATTCAGATCCTGAAGCT
CGTGCTGGCGTTTTAGAACCTGAAGGTATTGTTGAAGTCAAATATAAAGAAAAAGATATG
TTAAAGACCATACAACGACTTGATACAACAATTATTAATTGGACAAAAGAAATTGCTGAA
GCAAATGGTGATAAAGATAAAATCTCGGTGCTTGAAAATAAGATTAAGGATAGAACGCAA
GCAATGATGCATGTATATCATACGGTTGCTGTTCATTTTGCAGATCTGCATGATACACCC
GAGAGAATGTTAGAAAAAGGATGTATCAGTGAGATTGTACCTTGGCGTACATCACGCGTC
TGGTTGTATTGGAGATTAAGACGATTAATTTTAGAAGATTATTTCTCTAAAAAGATTCTC
AGTGTTCAAAATAGCTTATCAGTTGGTCAAGCAAAATCTATGCTCCGTCGTTGGTTTGTT
GAGGATAAGGGTGAAACAAATTCATTCTTATGGGATCAAAATGAACCAGTTGTTGAGTGG
CTCGAAGAGCAGAAAAAAGATGAATCGTCAACTGTCAATCGTAATATTAGTGCAGTTAGA
AAAGATGCCGTCATCTCACAAATTGAAATGGCTCTTCGGGAATGTCCGGATGTTGCTCTT
GAAGCAGTTATTGGTCTATGCAAAAATTTGACAGCAAATAATCGTAGTGAAGTTGTTCGT
ACTTTGGCTCAATTGGAGTTTGAAAATGCAAATATGCAAATTGAAGGTGGTGGTAGCAGT
CATTCGTCTATTTGA
>g8971.t1 Gene=g8971 Length=2344
MLKRRPSKRFVLAETGEETAWNTTTDNDTSSSGANTPQIQIDAGISAETTVVEEKPTTSV
TTSTESKQISQQQQQRLLSVPQTIKSGMKPSMSHGTGLGREYGDRDFLIATTEEFVKRFG
GNRVINKVLIANNGIAAVKCMRSVRRWSYEMFKNERAVRFVVMVTPEDLKANAEYIKMAD
HYVPVPGGSNNNNYANVELIVDIALRTQVQAIWAGWGHASENPKLPELLHKHGLVFLGPP
ERAMWALGDKVASSIVAQTAEIPTLPWSGSELKAQYSGKKIKISTELFNRGCVNSAEQGL
VAANKIGFPVMIKASEGGGGKGIRRVDSADEFPALFRQVQAEVPGSPIFVMKLARGARHL
EVQLLADQYGNAISLFGRDCSIQRRHQKIIEEAPAVIALPEIFEDMEKSAVRLAKMVGYV
SAGTVEYLYEPTEGKYFFLELNPRLQVEHPCTEMVADVNLPACQLQIGMGIPLYRIKDIR
LLYGESPWDSTVIDFDNPPNKPRPWGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNV
WGYFSVAASGGLHEFADSQFGHCFSWGENRNQARENLVIALKELSIRGDFRTTVEYLITL
LEANRFLDNTIDTAWLDALIAERVKSEKPDVLLGVICGSLHIADRQITEAFTNFQTSLEK
GQIQAANTLTNVIEVELISEAIKYKVQAVKSGENSYFLVMNGSFKEVDVHRLPDGAMLIS
LDGASYTTYMKEEVDRYRIIIGNQTCVFQKENDPSLLRSPSAGKLINLLVEDGSHVNKGQ
PFAEIEVMKMVMTLTSSEDGIITFVKRPGAVLEAGSLLGSMELDDPSLVTKAQLYRGTWP
VNDNIHVPEKLNRVHNNYKTILENTLAGYCLPDPYNAPRLREIIEKFMQSLRDPSLPLLE
LQEVIASISNRIPVSVEKKIRKLMTLYERNITSVLAQFPSQQIASVIDMHAATLQRRADR
DVFFLTTQGIVQLVQRYRNGIRGRMKAAVHELLKQYYSVESQFQHGHYDKCVAQIREANK
DNMRTVVNTIFSHSQVAKKNLLVTLLIDHLWSNEPGLTDELATTLSELTSLNRAEHSRVA
LRARQVLIAAHQPAYELRHNQMESIFLSAVDMYGHDFHPENLQRLILSETSIFDILHDFF
YHTNRAVCNAALEVYVRRAYTSYDLTCLQHLELSGEVPLVHFQFLLPTAHPNRVTIDGTI
SGSFMRTGCMAAFDSFDHFQQYSDEILDLLEDLSSPHYINSKALVDAVDAVESVSDDRRM
STSINVSLSGDASIRSEGDPSTTKSLEPIHILSIAVRDLGDMDDAQMGNLFGSFCLQHRD
ELLTRRVRRITFAALKKRQFPKFFTYRARDLFEEDRIYRHLEPACAFQLELNRMRTYDLE
ALPTANQKMHLYLGRAKTAKDQTLSDYRFFIRSIIRHSDLITKEASFEYLQNEGERVLLE
SMDELEVAFSHRYAKFTDCNHIFLNFVPCVIMDPAKIEESVTKMIMRYGPRLWKLRVLQA
ELKLIIRPTPQSETTTIRLCIANDSGYFLDICMYQEVTEGGVIKFNAYGKRQGPLHQLPI
STPYMTKDYLQQKRFQAQQNGTTYCFDFPDMFRQMTEKLWKQFSRDRPSEDIRIPEKVLL
ECNELVLDGDTMEEVQRLPGENDIGMVAWRIRLATPEFPDGRDIIVIANDLTSYIGSFGP
QEDMVFQKASEIARERKIPRIYISCNSGARIGLAEEVKSMFKIAWEDPEEPEKGFKYLYL
TTEDYSKIANQNSVRAILIEDEGEPRYKITDIIGQKDGIGVENLRYAGMIASETSKAYDD
IVTISMVTCRTIGIGSYLVRLGQRVIQIENSHIILTGYAALNKLLGRKVYASNNQLGGTQ
IMHNNGVSHKTDACDLDGIYTILHWLSYIPDCRGGKLPMVIPNDPINRNIGYIPTKAPYD
PRWMLAGRVNPVNHNEWETGFFDRSSFSEIMEPWAQTVVTGRARLGGIPVGVIAVETRTV
EVTIPADPANLDSESKTVQQAGQVWYPDSSYKTAQAIKDFDREELPLFIFANWRGFSGGQ
KDMYEQIVKFGAYIVDGLREYKQPVIIYLPPNAELRGGAWAVLDSLINPRYIETYSDPEA
RAGVLEPEGIVEVKYKEKDMLKTIQRLDTTIINWTKEIAEANGDKDKISVLENKIKDRTQ
AMMHVYHTVAVHFADLHDTPERMLEKGCISEIVPWRTSRVWLYWRLRRLILEDYFSKKIL
SVQNSLSVGQAKSMLRRWFVEDKGETNSFLWDQNEPVVEWLEEQKKDESSTVNRNISAVR
KDAVISQIEMALRECPDVALEAVIGLCKNLTANNRSEVVRTLAQLEFENANMQIEGGGSS
HSSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g8971.t1 | CDD | cd06850 | biotinyl_domain | 757 | 818 | 9.63351E-18 |
| 20 | g8971.t1 | Gene3D | G3DSA:3.40.50.12210 | - | 95 | 249 | 1.2E-68 |
| 18 | g8971.t1 | Gene3D | G3DSA:3.90.1770.10 | - | 250 | 291 | 8.9E-17 |
| 17 | g8971.t1 | Gene3D | G3DSA:3.30.1490.20 | - | 292 | 354 | 2.1E-30 |
| 15 | g8971.t1 | Gene3D | G3DSA:3.30.470.20 | - | 356 | 620 | 4.7E-107 |
| 16 | g8971.t1 | Gene3D | G3DSA:2.40.50.100 | - | 752 | 823 | 2.4E-24 |
| 22 | g8971.t1 | Gene3D | G3DSA:3.90.226.10 | - | 1563 | 1890 | 1.6E-148 |
| 19 | g8971.t1 | Gene3D | G3DSA:2.40.460.10 | Biotin dependent carboxylase carboxyltransferase | 1712 | 1777 | 1.6E-148 |
| 21 | g8971.t1 | Gene3D | G3DSA:3.90.226.10 | - | 1895 | 2299 | 3.5E-181 |
| 28 | g8971.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - |
| 29 | g8971.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 37 | - |
| 30 | g8971.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 75 | - |
| 7 | g8971.t1 | PANTHER | PTHR45728 | ACETYL-COA CARBOXYLASE, ISOFORM A | 34 | 2327 | 0.0 |
| 8 | g8971.t1 | PANTHER | PTHR45728:SF1 | ACETYL-COA CARBOXYLASE 2 | 34 | 2327 | 0.0 |
| 6 | g8971.t1 | Pfam | PF00289 | Biotin carboxylase, N-terminal domain | 125 | 244 | 8.0E-32 |
| 4 | g8971.t1 | Pfam | PF02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain | 280 | 474 | 1.9E-51 |
| 1 | g8971.t1 | Pfam | PF02785 | Biotin carboxylase C-terminal domain | 511 | 617 | 5.3E-20 |
| 5 | g8971.t1 | Pfam | PF00364 | Biotin-requiring enzyme | 757 | 819 | 8.3E-15 |
| 2 | g8971.t1 | Pfam | PF08326 | Acetyl-CoA carboxylase, central region | 822 | 1556 | 2.0E-247 |
| 3 | g8971.t1 | Pfam | PF01039 | Carboxyl transferase domain | 1656 | 2210 | 1.5E-170 |
| 24 | g8971.t1 | ProSitePatterns | PS00866 | Carbamoyl-phosphate synthase subdomain signature 1. | 308 | 322 | - |
| 25 | g8971.t1 | ProSitePatterns | PS00867 | Carbamoyl-phosphate synthase subdomain signature 2. | 438 | 445 | - |
| 26 | g8971.t1 | ProSitePatterns | PS00188 | Biotin-requiring enzymes attachment site. | 779 | 796 | - |
| 32 | g8971.t1 | ProSiteProfiles | PS50979 | Biotin carboxylation domain profile. | 124 | 621 | 44.875 |
| 35 | g8971.t1 | ProSiteProfiles | PS50975 | ATP-grasp fold profile. | 277 | 469 | 32.513 |
| 33 | g8971.t1 | ProSiteProfiles | PS50968 | Biotinyl/lipoyl domain profile. | 748 | 822 | 23.123 |
| 34 | g8971.t1 | ProSiteProfiles | PS50980 | Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. | 1563 | 1901 | 49.876 |
| 31 | g8971.t1 | ProSiteProfiles | PS50989 | Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. | 1905 | 2221 | 51.369 |
| 27 | g8971.t1 | SMART | SM00878 | Biotin_carb_C_2 | 510 | 617 | 2.1E-22 |
| 9 | g8971.t1 | SUPERFAMILY | SSF52440 | PreATP-grasp domain | 103 | 247 | 1.06E-51 |
| 13 | g8971.t1 | SUPERFAMILY | SSF56059 | Glutathione synthetase ATP-binding domain-like | 248 | 499 | 4.24E-67 |
| 10 | g8971.t1 | SUPERFAMILY | SSF51246 | Rudiment single hybrid motif | 506 | 618 | 2.09E-27 |
| 14 | g8971.t1 | SUPERFAMILY | SSF51230 | Single hybrid motif | 747 | 820 | 1.05E-12 |
| 11 | g8971.t1 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 1564 | 1891 | 6.22E-77 |
| 12 | g8971.t1 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 1897 | 2288 | 6.39E-111 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003989 | acetyl-CoA carboxylase activity | MF |
| GO:0046872 | metal ion binding | MF |
| GO:0005524 | ATP binding | MF |
| GO:0006633 | fatty acid biosynthetic process | BP |
| GO:0016874 | ligase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K11262 (acetyl-CoA carboxylase / biotin carboxylase 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
