General information for g8971.t66
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-CoA carboxylase.
Parent gene
- The parent gene g8971 is located on chr_2: 34268266..34272771 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8971 | g8971.t66 | isoform | g8971.t66 | 34268266 | 34269263 |
| chr_2 | g8971 | g8971.t66 | exon | g8971.t66.exon1 | 34268266 | 34269263 |
| chr_2 | g8971 | g8971.t66 | cds | g8971.t66.CDS1 | 34268266 | 34269126 |
| chr_2 | g8971 | g8971.t66 | TSS | g8971.t66 | NA | NA |
| chr_2 | g8971 | g8971.t66 | TTS | g8971.t66 | NA | NA |
Sequences
>g8971.t66 Gene=g8971 Length=998
GTTTAACAGACGAACTAGCCACAACCTTGAGTGAACTTACATCATTAAATCGTGCCGAAC
ATTCACGTGTTGCTTTGCGTGCACGTCAAGTTTTGATTGCTGCACATCAACCGGCATATG
AATTGCGTCACAATCAGATGGAATCAATTTTCTTATCAGCAGTTGACATGTATGGTCATG
ATTTTCATCCTGAAAATTTGCAACGTTTGATTTTATCTGAGACATCAATTTTTGATATTC
TTCATGATTTCTTCTATCATACAAATCGTGCCGTTTGTAATGCTGCTCTTGAAGTCTATG
TTCGCAGAGCTTATACATCATACGATCTAACATGCTTGCAACATCTTGAATTGAGTGGTG
AAGTGCCTCTTGTTCATTTTCAATTTCTTTTGCCAACTGCACATCCTAATCGTGTAACAA
TTGATGGAACAATTAGTGGAAGTTTCATGAGAACTGGTTGTATGGCAGCTTTTGATTCAT
TCGATCATTTCCAACAATATTCTGATGAAATTTTGGATTTATTAGAAGATTTATCATCAC
CACATTATATCAATTCAAAAGCCTTAGTTGACGCAGTTGATGCTGTTGAGTCAGTCTCTG
ATGATCGTCGCATGAGTACATCGATTAATGTCTCACTCTCTGGTGATGCATCAATTCGTT
CAGAAGGAGATCCATCAACTACAAAATCTTTAGAGCCAATTCATATTTTGAGCATTGCTG
TAAGAGATTTAGGTGATATGGATGATGCACAAATGGGAAATCTTTTTGGATCTTTCTGTT
TACAACATCGTGATGAATTGCTTACTCGACGTGTACGAAGAATTACATTTGCAGCATTGA
AAAAACGTCAATTTCCAAAATTCTTTACTTATCGTGCAAGAGATTTATTTGAAGAAGATC
GTATTTATCGTCATTTAGAACCAGCATGTGCATTCCAATTGGAATTAAATAGAATGCGCA
CATATGATCTTGAAGCATTGCCTACAGCTAATCAAAAA
>g8971.t66 Gene=g8971 Length=287
MESIFLSAVDMYGHDFHPENLQRLILSETSIFDILHDFFYHTNRAVCNAALEVYVRRAYT
SYDLTCLQHLELSGEVPLVHFQFLLPTAHPNRVTIDGTISGSFMRTGCMAAFDSFDHFQQ
YSDEILDLLEDLSSPHYINSKALVDAVDAVESVSDDRRMSTSINVSLSGDASIRSEGDPS
TTKSLEPIHILSIAVRDLGDMDDAQMGNLFGSFCLQHRDELLTRRVRRITFAALKKRQFP
KFFTYRARDLFEEDRIYRHLEPACAFQLELNRMRTYDLEALPTANQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8971.t66 | PANTHER | PTHR45728 | ACETYL-COA CARBOXYLASE, ISOFORM A | 2 | 287 | 0 |
| 3 | g8971.t66 | PANTHER | PTHR45728:SF1 | ACETYL-COA CARBOXYLASE 2 | 2 | 287 | 0 |
| 1 | g8971.t66 | Pfam | PF08326 | Acetyl-CoA carboxylase, central region | 1 | 287 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003989 | acetyl-CoA carboxylase activity | MF |
| GO:0005524 | ATP binding | MF |
| GO:0006633 | fatty acid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
