Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g9028 | g9028.t5 | isoform | g9028.t5 | 34728047 | 34731468 |
chr_2 | g9028 | g9028.t5 | exon | g9028.t5.exon1 | 34728047 | 34728297 |
chr_2 | g9028 | g9028.t5 | cds | g9028.t5.CDS1 | 34728047 | 34728297 |
chr_2 | g9028 | g9028.t5 | exon | g9028.t5.exon2 | 34730582 | 34730750 |
chr_2 | g9028 | g9028.t5 | cds | g9028.t5.CDS2 | 34730582 | 34730750 |
chr_2 | g9028 | g9028.t5 | exon | g9028.t5.exon3 | 34730883 | 34731468 |
chr_2 | g9028 | g9028.t5 | cds | g9028.t5.CDS3 | 34730883 | 34730924 |
chr_2 | g9028 | g9028.t5 | TSS | g9028.t5 | 34731468 | 34731468 |
chr_2 | g9028 | g9028.t5 | TTS | g9028.t5 | NA | NA |
>g9028.t5 Gene=g9028 Length=1006
AGTTTACTTTCAATCGCCGGAGTGAGCGGATCACAAAAGCAAGACTAAAGACTTTATTTT
ATAAAAATCATATTTTTTTATTGCAAAATTATTTCTCGTATATGAAAAAGAATAAAAAAT
TCTAAAAAGCGATTGTTTTTTTGTTCTATCAATCAAAAAACAATTCGAGTGAACAAAAGA
GTGCAATGACTAATTATCAGTGAATCATATGAAATAATATTAATAAAATGAAATTATGTT
GATAAATATCAAATGAACAATGAATTGAACAATTTTTTGTATAATTATTGAATGATAGAG
AAAAAAAGACTTTTGACTAAAAAAAATATTTAGTGAGTGCTTCTATAATGTATTCCAATA
ATAATAATAATAGCTGATAAAAGGAAATTGATAATTCCGCCTTTCTTTGAAGCTCAATAA
TAAAAGACTCGATAAAGTGACATTTAAATTAAAAACAGAACTCTGCAATTAACTTGCATA
GATAGAGACTATATTTCTTTTTTTTATATTCAAAACTATTCATAATAATTTTCTATAAAC
CATAATGCCTGTCTATAATTTAAATGCTCGTAGACGACAAAATAAGTCAAAAGATTTCAT
TGATGAGATTCTAAACTTAGACTCGGGGTCACTGGATGAGGCATTAAAACTCGAGAAATT
TCTAGCAGACGATAGTATTCTCATTAAGCAAGAACCCGAAGAGCTCTCAATGGCCGAGGT
TCGTGACAGACAGAAGAAGGATAATCATAATATGATTGAACGACGACGACGTTTCAACAT
TAATGACAGAATAAAAGAACTTGGCACGTTATTACCGAAGACCAATGAATTTTTATTTGA
TATCATTCAGGACCTGCACATTCGACAACCTAATAAAGGTACAATTTTAAAATCATCAGT
AGACTATATCAAGTGTCTTAAACATGAAGTTAATCGTCTCAAGCGCAATGAACAGAAACA
AAAGGATTTGGATAATGTGAATCGGCGTCTGATAACGAGAATTCGG
>g9028.t5 Gene=g9028 Length=154
MPVYNLNARRRQNKSKDFIDEILNLDSGSLDEALKLEKFLADDSILIKQEPEELSMAEVR
DRQKKDNHNMIERRRRFNINDRIKELGTLLPKTNEFLFDIIQDLHIRQPNKGTILKSSVD
YIKCLKHEVNRLKRNEQKQKDLDNVNRRLITRIR
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
7 | g9028.t5 | CDD | cd11397 | bHLHzip_MITF_like | 60 | 137 | 5.97978E-30 |
6 | g9028.t5 | Coils | Coil | Coil | 122 | 142 | - |
5 | g9028.t5 | Gene3D | G3DSA:4.10.280.10 | HLH | 62 | 142 | 1.9E-23 |
2 | g9028.t5 | PANTHER | PTHR45776 | MIP04163P | 42 | 153 | 5.4E-43 |
3 | g9028.t5 | PANTHER | PTHR45776:SF2 | MIP04163P | 42 | 153 | 5.4E-43 |
1 | g9028.t5 | Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 64 | 125 | 1.6E-14 |
9 | g9028.t5 | ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 63 | 125 | 15.351 |
8 | g9028.t5 | SMART | SM00353 | finulus | 69 | 131 | 8.6E-13 |
4 | g9028.t5 | SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 60 | 134 | 2.75E-15 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | MF |
GO:0046983 | protein dimerization activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.