Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g9043 g9043.t12 TTS g9043.t12 34804259 34804259
chr_2 g9043 g9043.t12 isoform g9043.t12 34804325 34809487
chr_2 g9043 g9043.t12 exon g9043.t12.exon1 34804325 34804582
chr_2 g9043 g9043.t12 exon g9043.t12.exon2 34804681 34804919
chr_2 g9043 g9043.t12 cds g9043.t12.CDS1 34804896 34804919
chr_2 g9043 g9043.t12 exon g9043.t12.exon3 34805165 34805451
chr_2 g9043 g9043.t12 cds g9043.t12.CDS2 34805165 34805451
chr_2 g9043 g9043.t12 exon g9043.t12.exon4 34806778 34807072
chr_2 g9043 g9043.t12 cds g9043.t12.CDS3 34806778 34806982
chr_2 g9043 g9043.t12 exon g9043.t12.exon5 34809442 34809487
chr_2 g9043 g9043.t12 TSS g9043.t12 34809487 34809487

Sequences

>g9043.t12 Gene=g9043 Length=1125
AGTCGTTTCTAACACATCATACGGTGTTCTCTTGTCGCAACACTAGACGGCAGTTAAAAT
TAAATATTAACAACAGTAGCAGCTCTATATTTATTTTATCGCCCTTTTTCTAGCTCTAAC
TCATCTATATCCAAATATGACAACATTACGCTGGGGTATAGCATCTGCTGGAAGAATTTC
TAATGACTTTTGCGCTGCTTTATCAACACTTTCTAGTGATGATCACAAAATCATTGCGGT
TGCGGCTCGTTCACTTGAGAGTGCTAAGAAATTTGCTGAAACTTTCGAGATTCCAAGGTT
TTATGAAGGTTATCAGCAATTAGCTGACGATAATGAAGTAGATGCTGTTTATATTGGTGC
AATCAATACTGCTCATTTAGAAATAGGTCTTATGATGTTAGATGCAGGCAAACACATTCT
CTGTGAAAAACCACTAACTTTAAATCACAAGCAGTCTGAAACTCTCCTTAAACGTGCCAA
GGAGAAGAAGTTATTTTGTATGGAAGCAATTTGGTCACGTTTCTTTCCATCATACAAGCA
TCTTAAAAGTCGCATTGACAACAACGATCTTGGAGATATTAAAGAGGTTGAAGTTGAATT
TGGTTTTGAATTGGAACATATCGATAGAGACTCGGAGGTGGTACGATCTTAGATCTTGGT
GTATACACCATTCAAATCTCACAATTTGTCTTTCGCACCGAACCGATATCAATAAAGGCG
ACAGGTAAGTTGAATGATGAGGGCATTGATGTAGAGACAGATGTTGAGCTTAAATACCCG
AATGGCGGTGTGGCACATTTTAAGACTAGTGCCTTACGCGAACTTAGTAACAAGGCGACT
ATACGTGGCAGTAAAGCTTCCATGACTCTTCATTCATTCTGGTGTCCAACGTACTTGACC
GATATCGATGAAAACTTAAAGGAATGGAAATTGCCAAAGCAACGACTTGGCAAGTTTGAA
TTTCACAATAGTGCGGGCTTGCGATATGAAGCGGAAGAAACAAGAAAATGTATCAATGCA
GGATTACTTGAATGTGATGTCGTAACTCATCAAGAAAGCTTGACCATTGCTCGCATTCAA
GATGAAATTCGAAGACAAATTGGAGTAAAATTTGCTGAAGATTAG

>g9043.t12 Gene=g9043 Length=171
MTTLRWGIASAGRISNDFCAALSTLSSDDHKIIAVAARSLESAKKFAETFEIPRFYEGYQ
QLADDNEVDAVYIGAINTAHLEIGLMMLDAGKHILCEKPLTLNHKQSETLLKRAKEKKLF
CMEAIWSRFFPSYKHLKSRIDNNDLGDIKEVEVEFGFELEHIDRDSEVVRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9043.t12 Gene3D G3DSA:3.40.50.720 - 2 123 0.0e+00
6 g9043.t12 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 124 169 8.6e-06
2 g9043.t12 PANTHER PTHR22604 OXIDOREDUCTASES 2 164 0.0e+00
3 g9043.t12 PANTHER PTHR22604:SF105 TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE 2 164 0.0e+00
1 g9043.t12 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 122 0.0e+00
4 g9043.t12 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 3 156 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed