General information for g9043.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g9043 is located on chr_2: 34804903..34809487 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9043 | g9043.t3 | isoform | g9043.t3 | 34803794 | 34805451 |
| chr_2 | g9043 | g9043.t3 | exon | g9043.t3.exon1 | 34803794 | 34804582 |
| chr_2 | g9043 | g9043.t3 | cds | g9043.t3.CDS1 | 34804325 | 34804582 |
| chr_2 | g9043 | g9043.t3 | exon | g9043.t3.exon2 | 34804681 | 34804927 |
| chr_2 | g9043 | g9043.t3 | cds | g9043.t3.CDS2 | 34804681 | 34804927 |
| chr_2 | g9043 | g9043.t3 | exon | g9043.t3.exon3 | 34805160 | 34805451 |
| chr_2 | g9043 | g9043.t3 | cds | g9043.t3.CDS3 | 34805160 | 34805401 |
| chr_2 | g9043 | g9043.t3 | TSS | g9043.t3 | NA | NA |
| chr_2 | g9043 | g9043.t3 | TTS | g9043.t3 | NA | NA |
Sequences
>g9043.t3 Gene=g9043 Length=1328
ATGCTGTTTATATTGGTGCAATCAATACTGCTCATTTAGAAATAGGTCTTATGATGTTAG
ATGCAGGCAAACACATTCTCTGTGAAAAACCACTAACTTTAAATCACAAGCAGTCTGAAA
CTCTCCTTAAACGTGCCAAGGAGAAGAAGTTATTTTGTATGGAAGCAATTTGGTCACGTT
TCTTTCCATCATACAAGCATCTTAAAAGTCGCATTGACAACAACGATCTTGGAGATATTA
AAGAGGTTGAAGTTGAATTTGGTTTTGAATTGGAACATATCGATAGAGTTACTAAAAAAG
GACTCGGAGGTGGTACGATCTTAGATCTTGGTGTATACACCATTCAAATCTCACAATTTG
TCTTTCGCACCGAACCGATATCAATAAAGGCGACAGGTAAGTTGAATGATGAGGGCATTG
ATGTAGAGACAGATGTTGAGCTTAAATACCCGAATGGCGGTGTGGCACATTTTAAGACTA
GTGCCTTACGCGAACTTAGTAACAAGGCGACTATACGTGGCAGTAAAGCTTCCATGACTC
TTCATTCATTCTGGTGTCCAACGTACTTGACCGATATCGATGAAAACTTAAAGGAATGGA
AATTGCCAAAGCAACGACTTGGCAAGTTTGAATTTCACAATAGTGCGGGCTTGCGATATG
AAGCGGAAGAAACAAGAAAATGTATCAATGCAGGATTACTTGAATGTGATGTCGTAACTC
ATCAAGAAAGCTTGACCATTGCTCGCATTCAAGATGAAATTCGAAGACAAATTGGAGTAA
AATTTGCTGAAGATTAGACATAAACACACAAAATGGCCATTGTAATCAATTAATTTTGTT
AATTAAAAGCTTTTCATTTCACTTTCTTTGTTTTATCTTTCCTGTTTTGCTTCCATCTTT
TAGACATCTTGATACAATTGAAGGAACAACATATATATAAAGTAAAACTTTAAGAAATTC
TTTGAATAATTTGAGAAGTTTTCTTAAGAATAATAAAAAATAATATCTTGCATTGTAAAT
GCAGTAATTTTATAATAAACTGCATGAAATTTTATTTCTAAAAAAAGTATAGCATAAAAA
ATTTATAGTACTAAAATAATTTCCATTATAATAATATTAAAACATAAAAATACTTTTTTA
ATTTTAACCATAATAACCACATTCTTATATACTGATAAAAAAATTTACAATGCGAATTTT
CAAATAAATTTTGTTCAAATTTAACAAAAATATTGTCAAATTGTAAAATTTTACAATCAA
TATTAAAAAATGAAAAAATGAAAGGAAATTTGAAAAAAGAAATATTTTCTTTTAAAATTA
CTCCAAAA
>g9043.t3 Gene=g9043 Length=248
MMLDAGKHILCEKPLTLNHKQSETLLKRAKEKKLFCMEAIWSRFFPSYKHLKSRIDNNDL
GDIKEVEVEFGFELEHIDRVTKKGLGGGTILDLGVYTIQISQFVFRTEPISIKATGKLND
EGIDVETDVELKYPNGGVAHFKTSALRELSNKATIRGSKASMTLHSFWCPTYLTDIDENL
KEWKLPKQRLGKFEFHNSAGLRYEAEETRKCINAGLLECDVVTHQESLTIARIQDEIRRQ
IGVKFAED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9043.t3 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 40 | 0.0e+00 |
| 7 | g9043.t3 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 41 | 248 | 0.0e+00 |
| 2 | g9043.t3 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 1 | 246 | 0.0e+00 |
| 3 | g9043.t3 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 1 | 246 | 0.0e+00 |
| 1 | g9043.t3 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 52 | 184 | 1.2e-06 |
| 4 | g9043.t3 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 65 | 0.0e+00 |
| 5 | g9043.t3 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 45 | 212 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed