General information for g9043.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g9043 is located on chr_2: 34804903..34809487 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9043 | g9043.t4 | isoform | g9043.t4 | 34803959 | 34809487 |
| chr_2 | g9043 | g9043.t4 | exon | g9043.t4.exon1 | 34803959 | 34804582 |
| chr_2 | g9043 | g9043.t4 | cds | g9043.t4.CDS1 | 34804325 | 34804582 |
| chr_2 | g9043 | g9043.t4 | exon | g9043.t4.exon2 | 34804681 | 34804927 |
| chr_2 | g9043 | g9043.t4 | cds | g9043.t4.CDS2 | 34804681 | 34804927 |
| chr_2 | g9043 | g9043.t4 | exon | g9043.t4.exon3 | 34805160 | 34805451 |
| chr_2 | g9043 | g9043.t4 | cds | g9043.t4.CDS3 | 34805160 | 34805451 |
| chr_2 | g9043 | g9043.t4 | exon | g9043.t4.exon4 | 34806778 | 34807072 |
| chr_2 | g9043 | g9043.t4 | cds | g9043.t4.CDS4 | 34806778 | 34806982 |
| chr_2 | g9043 | g9043.t4 | exon | g9043.t4.exon5 | 34809442 | 34809487 |
| chr_2 | g9043 | g9043.t4 | TSS | g9043.t4 | 34809487 | 34809487 |
| chr_2 | g9043 | g9043.t4 | TTS | g9043.t4 | NA | NA |
Sequences
>g9043.t4 Gene=g9043 Length=1504
AGTCGTTTCTAACACATCATACGGTGTTCTCTTGTCGCAACACTAGACGGCAGTTAAAAT
TAAATATTAACAACAGTAGCAGCTCTATATTTATTTTATCGCCCTTTTTCTAGCTCTAAC
TCATCTATATCCAAATATGACAACATTACGCTGGGGTATAGCATCTGCTGGAAGAATTTC
TAATGACTTTTGCGCTGCTTTATCAACACTTTCTAGTGATGATCACAAAATCATTGCGGT
TGCGGCTCGTTCACTTGAGAGTGCTAAGAAATTTGCTGAAACTTTCGAGATTCCAAGGTT
TTATGAAGGTTATCAGCAATTAGCTGACGATAATGAAGTAGATGCTGTTTATATTGGTGC
AATCAATACTGCTCATTTAGAAATAGGTCTTATGATGTTAGATGCAGGCAAACACATTCT
CTGTGAAAAACCACTAACTTTAAATCACAAGCAGTCTGAAACTCTCCTTAAACGTGCCAA
GGAGAAGAAGTTATTTTGTATGGAAGCAATTTGGTCACGTTTCTTTCCATCATACAAGCA
TCTTAAAAGTCGCATTGACAACAACGATCTTGGAGATATTAAAGAGGTTGAAGTTGAATT
TGGTTTTGAATTGGAACATATCGATAGAGTTACTAAAAAAGGACTCGGAGGTGGTACGAT
CTTAGATCTTGGTGTATACACCATTCAAATCTCACAATTTGTCTTTCGCACCGAACCGAT
ATCAATAAAGGCGACAGGTAAGTTGAATGATGAGGGCATTGATGTAGAGACAGATGTTGA
GCTTAAATACCCGAATGGCGGTGTGGCACATTTTAAGACTAGTGCCTTACGCGAACTTAG
TAACAAGGCGACTATACGTGGCAGTAAAGCTTCCATGACTCTTCATTCATTCTGGTGTCC
AACGTACTTGACCGATATCGATGAAAACTTAAAGGAATGGAAATTGCCAAAGCAACGACT
TGGCAAGTTTGAATTTCACAATAGTGCGGGCTTGCGATATGAAGCGGAAGAAACAAGAAA
ATGTATCAATGCAGGATTACTTGAATGTGATGTCGTAACTCATCAAGAAAGCTTGACCAT
TGCTCGCATTCAAGATGAAATTCGAAGACAAATTGGAGTAAAATTTGCTGAAGATTAGAC
ATAAACACACAAAATGGCCATTGTAATCAATTAATTTTGTTAATTAAAAGCTTTTCATTT
CACTTTCTTTGTTTTATCTTTCCTGTTTTGCTTCCATCTTTTAGACATCTTGATACAATT
GAAGGAACAACATATATATAAAGTAAAACTTTAAGAAATTCTTTGAATAATTTGAGAAGT
TTTCTTAAGAATAATAAAAAATAATATCTTGCATTGTAAATGCAGTAATTTTATAATAAA
CTGCATGAAATTTTATTTCTAAAAAAAGTATAGCATAAAAAATTTATAGTACTAAAATAA
TTTCCATTATAATAATATTAAAACATAAAAATACTTTTTTAATTTTAACCATAATAACCA
CATT
>g9043.t4 Gene=g9043 Length=333
MTTLRWGIASAGRISNDFCAALSTLSSDDHKIIAVAARSLESAKKFAETFEIPRFYEGYQ
QLADDNEVDAVYIGAINTAHLEIGLMMLDAGKHILCEKPLTLNHKQSETLLKRAKEKKLF
CMEAIWSRFFPSYKHLKSRIDNNDLGDIKEVEVEFGFELEHIDRVTKKGLGGGTILDLGV
YTIQISQFVFRTEPISIKATGKLNDEGIDVETDVELKYPNGGVAHFKTSALRELSNKATI
RGSKASMTLHSFWCPTYLTDIDENLKEWKLPKQRLGKFEFHNSAGLRYEAEETRKCINAG
LLECDVVTHQESLTIARIQDEIRRQIGVKFAED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9043.t4 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 123 | 0.0e+00 |
| 8 | g9043.t4 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 124 | 333 | 0.0e+00 |
| 3 | g9043.t4 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 2 | 331 | 0.0e+00 |
| 4 | g9043.t4 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 2 | 331 | 0.0e+00 |
| 1 | g9043.t4 | Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 4 | 121 | 0.0e+00 |
| 2 | g9043.t4 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 137 | 268 | 2.6e-06 |
| 5 | g9043.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 156 | 0.0e+00 |
| 6 | g9043.t4 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 130 | 297 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00078 (dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed