General information for g9076.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Speckle-type POZ protein-like.
Parent gene
- The parent gene g9076 is located on chr_2: 35076232..35077518 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9076 | g9076.t1 | isoform | g9076.t1 | 35076232 | 35077518 |
| chr_2 | g9076 | g9076.t1 | exon | g9076.t1.exon1 | 35076232 | 35076373 |
| chr_2 | g9076 | g9076.t1 | cds | g9076.t1.CDS1 | 35076232 | 35076373 |
| chr_2 | g9076 | g9076.t1 | exon | g9076.t1.exon2 | 35076426 | 35076750 |
| chr_2 | g9076 | g9076.t1 | cds | g9076.t1.CDS2 | 35076426 | 35076750 |
| chr_2 | g9076 | g9076.t1 | exon | g9076.t1.exon3 | 35076804 | 35076972 |
| chr_2 | g9076 | g9076.t1 | cds | g9076.t1.CDS3 | 35076804 | 35076972 |
| chr_2 | g9076 | g9076.t1 | exon | g9076.t1.exon4 | 35077032 | 35077317 |
| chr_2 | g9076 | g9076.t1 | cds | g9076.t1.CDS4 | 35077032 | 35077317 |
| chr_2 | g9076 | g9076.t1 | exon | g9076.t1.exon5 | 35077376 | 35077518 |
| chr_2 | g9076 | g9076.t1 | cds | g9076.t1.CDS5 | 35077376 | 35077518 |
| chr_2 | g9076 | g9076.t1 | TSS | g9076.t1 | NA | NA |
| chr_2 | g9076 | g9076.t1 | TTS | g9076.t1 | NA | NA |
Sequences
>g9076.t1 Gene=g9076 Length=1065
ATGAGTTCGGTTGATTTAATTAATAAAACTACATATTGTGATTTGACACGTTATTCAAGC
ACTGAATTGACATGGACATTAGAAAATTATTCACCTGCTAAAAATTTACAGCATGAATTT
CATCTTACTGATAGCATTATTATGTTCCTTGAACTTCGAATTAATCAAAATTTTTATTCT
GGAAGTGAATATTATTATGGATCAAGCTATTTCTGTATTAATCCATTTGTAAAATACCAA
TGGTCAAAACATGATGCGAAGAAATTTATAAAGTTACAAGTACATACATCTCGTGGTGGT
GCAAATGTGACTCGGGACTTTTCAATTATGAATAAGGACTTTGTAGTTATTAATTCTCAA
AGCAACTTTATGACGCAATGCAATATCAACAAATACATCGAGAAAAACATACTGACAATA
AACGTTCGAGCTACAATCAAGGAAGTTTTTGATAATTTTCCCATTGGCAATGAACTTTTA
AATACAAAAGGAAAAATTCTCAAAGATTTTCATTCATTAATTTCAAATCAACAAATTTCT
GATTTTAAATTTATTGTGGAAGATAAAGAATTTTATGTTCACAAAGTTCTTTTGGCTGCT
CGAAGTCCAGTTTTTATGAAAATGTTCACAAGTGATTTTAATGAAAGTCATTCAAAAGAA
GGAAGAATCAATGATATTAGCAAAGAAGCTTTTCAAGAATTTCTTCGTTTTCTTTATACG
GAAACAATTGAAGACATTAATCTCTATGTGCTTGATTTACTTGCAATTGCCGATCTTTAT
GAAGTTGAAGATTTGAAAGCAATTTGTATGGCACAACTATTGACTGAATTGACTGAGGAA
AATGCACCACATGTATTTCAATATGCTCATCGATATCGTTGCGATAATGAGCTTAAAGAT
GCTGCTTTTAAACTTATTAAAAGTTCATTTCAGAAAAATAACATTGAGATTCCTAACGAG
TTTATTTTTGCACCATCAGCATTGCAATTTGCAATTGAAGCAAAAAATAAAATATTTGAG
ACACTTAAGGTGGAAGTTGCACTATCGGAAATGAAAGCAAAATGA
>g9076.t1 Gene=g9076 Length=354
MSSVDLINKTTYCDLTRYSSTELTWTLENYSPAKNLQHEFHLTDSIIMFLELRINQNFYS
GSEYYYGSSYFCINPFVKYQWSKHDAKKFIKLQVHTSRGGANVTRDFSIMNKDFVVINSQ
SNFMTQCNINKYIEKNILTINVRATIKEVFDNFPIGNELLNTKGKILKDFHSLISNQQIS
DFKFIVEDKEFYVHKVLLAARSPVFMKMFTSDFNESHSKEGRINDISKEAFQEFLRFLYT
ETIEDINLYVLDLLAIADLYEVEDLKAICMAQLLTELTEENAPHVFQYAHRYRCDNELKD
AAFKLIKSSFQKNNIEIPNEFIFAPSALQFAIEAKNKIFETLKVEVALSEMKAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9076.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 180 | 260 | 0.000 |
| 6 | g9076.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 157 | 308 | 0.000 |
| 2 | g9076.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 154 | 309 | 0.000 |
| 3 | g9076.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 154 | 309 | 0.000 |
| 1 | g9076.t1 | Pfam | PF00651 | BTB/POZ domain | 171 | 274 | 0.000 |
| 7 | g9076.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 180 | 247 | 18.327 |
| 5 | g9076.t1 | SMART | SM00225 | BTB_4 | 180 | 277 | 0.000 |
| 4 | g9076.t1 | SUPERFAMILY | SSF54695 | POZ domain | 165 | 274 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed