General information for g9077.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9077 is located on chr_2: 35119418..35120170 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9077 | g9077.t1 | TTS | g9077.t1 | 35083549 | 35083549 |
| chr_2 | g9077 | g9077.t1 | isoform | g9077.t1 | 35084055 | 35120170 |
| chr_2 | g9077 | g9077.t1 | exon | g9077.t1.exon1 | 35084055 | 35084208 |
| chr_2 | g9077 | g9077.t1 | cds | g9077.t1.CDS1 | 35084055 | 35084208 |
| chr_2 | g9077 | g9077.t1 | exon | g9077.t1.exon2 | 35084295 | 35085700 |
| chr_2 | g9077 | g9077.t1 | cds | g9077.t1.CDS2 | 35084295 | 35085700 |
| chr_2 | g9077 | g9077.t1 | exon | g9077.t1.exon3 | 35087446 | 35087675 |
| chr_2 | g9077 | g9077.t1 | cds | g9077.t1.CDS3 | 35087446 | 35087675 |
| chr_2 | g9077 | g9077.t1 | exon | g9077.t1.exon4 | 35087747 | 35087956 |
| chr_2 | g9077 | g9077.t1 | cds | g9077.t1.CDS4 | 35087747 | 35087956 |
| chr_2 | g9077 | g9077.t1 | exon | g9077.t1.exon5 | 35102228 | 35102657 |
| chr_2 | g9077 | g9077.t1 | cds | g9077.t1.CDS5 | 35102228 | 35102657 |
| chr_2 | g9077 | g9077.t1 | exon | g9077.t1.exon6 | 35120075 | 35120170 |
| chr_2 | g9077 | g9077.t1 | cds | g9077.t1.CDS6 | 35120075 | 35120170 |
| chr_2 | g9077 | g9077.t1 | TSS | g9077.t1 | 35120682 | 35120682 |
Sequences
>g9077.t1 Gene=g9077 Length=2526
ATGGTTGATTCACTCGCGGCACTTGGTCGTGTTATGGATTTTCAAAGCGCAATGGAGACA
TTCGCCGAAGCATGGATGGCAGCTAATGTAACACAGACACAAGCTTTGGCATTGACCCGT
CCAAAGACACCGAAAAAAGAACAATCGGGTTCTCCACCTGGTAATCTAACACAACGTGAT
CGTCAAAGTGAAAATATCAGAAGTCCAAGTGTGGCAGATGTACAGCATTCACATTCACGA
TCAAGCTCAAAGACGCCAATTAATATGAGTTCAAGCGGTAATGAAAACGCAAACACTCCA
GTCGAAATGAATTCACCAATTGCAAGCGCAAAAATTGCACCATCGCCATTGCCTTCAAAT
GAGAAAGTTAATCATCATCATAGTAGTGTTGGTGAGAGTGGCAATGCACATAATAATGGT
ATGAACAGTAATAATCAAACACCTTTTGCAAACATCAATGGACCAGACAAAATTTTACCA
TCACCATCAGTTGACAGAAAGGACTTTGATTTTTCTAAAGTTAATGCAAAATCTTTGCCA
TTGCATTGTGTGGTTGAGTCTGTTCCATCACTTCAAGCATCATTCCAAGTAGACGCACGC
AGTCCATGGCGAAGAAGGCCAAATATCGAAATGGATAGTTACATCATTGTGCCTGCAACA
ACGCCATTTTGTGATATTGTCACGATCGCATTGCAACGACTTGGTTATTCATCTGACATT
TCAAATACTGCAAAAGGAGCAATCATAATCAAAAATTGGAAGCCACTACCACTCGATAAA
ATCACCGATAACACATTAATATCAGTCAGTGAAATTCTCGGTGAATTAACATCAAATGTG
ACATTAAAAATTACAATAATACGTACAAAACCTACGCAGCTGGCAGAAATAAAAGACAAA
CTGTTGAAATTGTTGATCCTACAATCCCACACTGTATTACGATCTAGTGGATGTCCATTA
GATGAGATCACATTATCTCAGATTTGTCGTAGTCCATTGCAGAATAATTTTCCTTTTCCT
GAGATTAATGAAGAAGTGAGACGAAAATTTGATCAATGGTGGGCAAGTCAACTTACGCCA
CAAGCTAATCCGATTGCTCATAAAATTTTGCCATTTATAAATCAACAATCAGCAGAATTG
GATTTTGCTGCACCCAATCTTCACAATTTACAGCAATCACGTGAATCATTAATTGAAAAT
CATCATCCAACGCATCCTGGAATGATGGTTCATCCAGCATTACAGACAGTACATTCACAA
TATCCCAATCAAAAGACAAGAATGCGCACAAGTTTTGATCCAGAAATGGAATTACCTAAA
TTACAAAGATGGTTCCAAGAAAATCCACATCCATCTCGACAACAAATTCAGACTTATGTT
GTGCAGCTTAATTCACTCGAGTCAAGACGCGGTAGAAAGCCACTTGATGTCAACAATGTC
GTTTATTGGTTTAAGAATGCTAGAGCAGCTCAAAAGCGAGCAGAAACTCGAGGTAGTGTA
CATAGTATGAATAATGGCTATAATACACCCAGTAATTTGATGATGCCTCATCATGGTGAT
TATATGAAGAGTTCACCTAGCGCACCTTCTGATGATATCGATAACATTTCACAACATTCC
GATGATGACGATGATGATCGTCCACTATCACCACAACTTCCACTTCAATTGACTGTTCAT
GAAAGACATCGTTCATCCTCATCACCACCAAATATTGAATGTGAAACAAGAATTAAATTA
GAGGATGATAAAAACCAAAGTCCAGTGCATTGTAGTAGCAAAAGTGAGGACGAAGAGAAA
AATAATTGTCGAAATGAAAATAGCGGAAGTGCAAAAGACGGCAAAGGCAATGATGACAAT
GAAAATGTTCAGAATTTTAGTAAAAGCAGCAGCAACAACAACAACGATGATTCAATAAAG
TCAAATAATTCAATTGACCACAGCTCAAATTCACCACAGCCACGTTCGCCCTCACCTTCG
GAAGATCTCGATATTGATGATCCAGAAATGTCACAAATGGATGAATATCGTTCACCATCA
CCAATGGATTCAAAACGTGACCTTCTACTTCCTATGATGAATCCAAATTCAATGTTTTCT
GCTCATTCTATCATGTACATGAGTCATTATATTCCAGCAATGCAAAATGCACATCAATCA
ATGCATGGACAGACACCTGCTGCTCTTAATGCTTCAGGTCTGAATTTATCAAACTCTTTC
AATAGCAATGATGAACGACGAAAGCGTAATAGAACATTCATAGATCCAGTCACGGAAGTT
CCCAAATTAGAGCAATGGTTTTCAATGAACACACATCCATCGCATAATTTAATTCTGAAA
TATACAGAAGATTTGAACCGGATGCCATACAGGCAAAAGTTTCCACGATTGGAAAGCAAA
AATGTGCAATTTTGGTTTAAAAATCGAAGAGCTAAATGCAAACGTCTAAAAATGTCTCTT
TATGATTCACCCTCACAGCTTGCTGGTCTCAATCATCCATTCCATAGCAATTCAGATCGT
GAATAA
>g9077.t1 Gene=g9077 Length=841
MVDSLAALGRVMDFQSAMETFAEAWMAANVTQTQALALTRPKTPKKEQSGSPPGNLTQRD
RQSENIRSPSVADVQHSHSRSSSKTPINMSSSGNENANTPVEMNSPIASAKIAPSPLPSN
EKVNHHHSSVGESGNAHNNGMNSNNQTPFANINGPDKILPSPSVDRKDFDFSKVNAKSLP
LHCVVESVPSLQASFQVDARSPWRRRPNIEMDSYIIVPATTPFCDIVTIALQRLGYSSDI
SNTAKGAIIIKNWKPLPLDKITDNTLISVSEILGELTSNVTLKITIIRTKPTQLAEIKDK
LLKLLILQSHTVLRSSGCPLDEITLSQICRSPLQNNFPFPEINEEVRRKFDQWWASQLTP
QANPIAHKILPFINQQSAELDFAAPNLHNLQQSRESLIENHHPTHPGMMVHPALQTVHSQ
YPNQKTRMRTSFDPEMELPKLQRWFQENPHPSRQQIQTYVVQLNSLESRRGRKPLDVNNV
VYWFKNARAAQKRAETRGSVHSMNNGYNTPSNLMMPHHGDYMKSSPSAPSDDIDNISQHS
DDDDDDRPLSPQLPLQLTVHERHRSSSSPPNIECETRIKLEDDKNQSPVHCSSKSEDEEK
NNCRNENSGSAKDGKGNDDNENVQNFSKSSSNNNNDDSIKSNNSIDHSSNSPQPRSPSPS
EDLDIDDPEMSQMDEYRSPSPMDSKRDLLLPMMNPNSMFSAHSIMYMSHYIPAMQNAHQS
MHGQTPAALNASGLNLSNSFNSNDERRKRNRTFIDPVTEVPKLEQWFSMNTHPSHNLILK
YTEDLNRMPYRQKFPRLESKNVQFWFKNRRAKCKRLKMSLYDSPSQLAGLNHPFHSNSDR
E
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9077.t1 | CDD | cd11585 | SATB1_N | 179 | 284 | 3.41535E-44 |
| 12 | g9077.t1 | CDD | cd00086 | homeodomain | 427 | 495 | 3.19978E-10 |
| 13 | g9077.t1 | CDD | cd00086 | homeodomain | 748 | 817 | 1.56045E-8 |
| 10 | g9077.t1 | Gene3D | G3DSA:3.10.20.710 | - | 172 | 287 | 6.2E-31 |
| 8 | g9077.t1 | Gene3D | G3DSA:1.10.10.60 | - | 426 | 492 | 1.5E-11 |
| 9 | g9077.t1 | Gene3D | G3DSA:1.10.10.60 | - | 730 | 808 | 2.9E-14 |
| 21 | g9077.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 96 | - |
| 16 | g9077.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 619 | - |
| 17 | g9077.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 573 | - |
| 20 | g9077.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 619 | - |
| 18 | g9077.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 665 | - |
| 19 | g9077.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 658 | - |
| 4 | g9077.t1 | PANTHER | PTHR15116:SF16 | DEFECTIVE PROVENTRICULUS, ISOFORM A | 176 | 827 | 9.5E-197 |
| 5 | g9077.t1 | PANTHER | PTHR15116 | DNA-BINDING PROTEIN SATB FAMILY MEMBER | 176 | 827 | 9.5E-197 |
| 1 | g9077.t1 | Pfam | PF16534 | Ubiquitin-like oligomerisation domain of SATB | 177 | 286 | 5.1E-39 |
| 2 | g9077.t1 | Pfam | PF00046 | Homeodomain | 427 | 493 | 4.7E-7 |
| 3 | g9077.t1 | Pfam | PF00046 | Homeodomain | 749 | 815 | 3.0E-7 |
| 23 | g9077.t1 | ProSiteProfiles | PS50071 | ‘Homeobox’ domain profile. | 424 | 494 | 11.046 |
| 22 | g9077.t1 | ProSiteProfiles | PS50071 | ‘Homeobox’ domain profile. | 746 | 816 | 11.823 |
| 14 | g9077.t1 | SMART | SM00389 | HOX_1 | 425 | 498 | 1.7E-8 |
| 15 | g9077.t1 | SMART | SM00389 | HOX_1 | 747 | 820 | 1.6E-6 |
| 6 | g9077.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 427 | 495 | 2.84E-12 |
| 7 | g9077.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 748 | 820 | 1.67E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0006338 | chromatin remodeling | BP |
KEGG
Orthology
- This transcript has been annotated with K19774 (homeobox domain-containing protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed