Gene loci information

Transcript annotation

  • This transcript has been annotated as Ubiquitin-conjugating enzyme E2 G1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9156 g9156.t16 TTS g9156.t16 528549 528549
chr_1 g9156 g9156.t16 isoform g9156.t16 528625 530131
chr_1 g9156 g9156.t16 exon g9156.t16.exon1 528625 528860
chr_1 g9156 g9156.t16 cds g9156.t16.CDS1 528625 528860
chr_1 g9156 g9156.t16 exon g9156.t16.exon2 528921 529016
chr_1 g9156 g9156.t16 cds g9156.t16.CDS2 528921 529016
chr_1 g9156 g9156.t16 exon g9156.t16.exon3 529083 529112
chr_1 g9156 g9156.t16 cds g9156.t16.CDS3 529083 529112
chr_1 g9156 g9156.t16 exon g9156.t16.exon4 529297 529365
chr_1 g9156 g9156.t16 cds g9156.t16.CDS4 529297 529365
chr_1 g9156 g9156.t16 exon g9156.t16.exon5 529499 529652
chr_1 g9156 g9156.t16 cds g9156.t16.CDS5 529499 529565
chr_1 g9156 g9156.t16 exon g9156.t16.exon6 529729 530131
chr_1 g9156 g9156.t16 TSS g9156.t16 NA NA

Sequences

>g9156.t16 Gene=g9156 Length=988
TGTTGTTTATTTTTTGAAAAAAAAAACTGAAGGAAACGAGTCTTAACAAAAAATAATTTG
AATTTCATTTTGACAGGTATAACATGCATAAAATGTCTAAAATACTGAACTTTTTTAATT
TCAAAAACCTTTGTCGACTGTCGTCATAAGAGCCTGTCTCATTGTCGACTGAAGTAAAAA
CATTTGTAAAAATCGAGAAAACTAATTCACCTTCAAAATCCAAATTTTTAAGTGTTCTCA
TCTTTTTAAATCGTTTCAATACCTAAATTCTTAAAGTCTATGCAGTAATTTATTGATATT
TGCTAAAATTTGAAGAGAAAGAGTTCATAAATTCGATTTTTCGTAGTTCAAAAATTTTCA
TTGTTCTTGAAGAAGAAAAGAAAAAAAGTGTAGAAAGAGGTAAATACACTTCTGCCTTTT
AGCAGTACTATAAATTAGCACCAAATTGCTCGAGAGTACATTTTGGAAAGACTAAATTAA
ATTCTTTTTGATGGACACAACTGCATCACTTCTTTTAAAAAAGCAATTAGCAGAGCTCAA
TAAGCACCCAGTAGAAGGTTTCTCGGCAGGACTTGTTGATGACAATGATATTTTCAAATG
GGAAGTGCTGATAATTGGTCCTCCAGATACTTTATATGAAGGCGGATTCTTTAAAGCTCA
TCTTTACTTCCCTAAAGAATATCCACTAAGACCTCCTCGCATGCGTTTTGTTACAGAAAT
TTGGCATCCAAATATTGATCAAAATGGAGATGTCTGCATTAGTATCTTGCATGAACCTGG
TGATGACAAATGGGGATATGAAAAAGCTTCAGAACGTTGGCTTCCGGTACACACAGTTGA
GACAATTATTATTTCAGTTATTTCAATGTTAGCCGAACCGAATGATGAGTCACCTGCTAA
TGTAGATGCAGCAAAGCAATGGCGAGAAGCTTATCCGGAATTTAAGCGAAGAGTAGCTCG
TTGTGTCCGTAAAAGTCAAGAGGAGTAA

>g9156.t16 Gene=g9156 Length=165
MDTTASLLLKKQLAELNKHPVEGFSAGLVDDNDIFKWEVLIIGPPDTLYEGGFFKAHLYF
PKEYPLRPPRMRFVTEIWHPNIDQNGDVCISILHEPGDDKWGYEKASERWLPVHTVETII
ISVISMLAEPNDESPANVDAAKQWREAYPEFKRRVARCVRKSQEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g9156.t16 CDD cd00195 UBCc 8 159 2.3956E-65
5 g9156.t16 Gene3D G3DSA:3.10.110.10 Ubiquitin Conjugating Enzyme 3 165 1.7E-72
2 g9156.t16 PANTHER PTHR24067:SF258 UBIQUITIN-CONJUGATING ENZYME E2G 1A (UBC7 HOMOLOG, YEAST) 7 164 3.1E-86
3 g9156.t16 PANTHER PTHR24067 UBIQUITIN-CONJUGATING ENZYME E2 7 164 3.1E-86
1 g9156.t16 Pfam PF00179 Ubiquitin-conjugating enzyme 9 158 2.2E-51
7 g9156.t16 ProSitePatterns PS00183 Ubiquitin-conjugating enzymes active site. 78 93 -
9 g9156.t16 ProSiteProfiles PS50127 Ubiquitin-conjugating enzymes family profile. 7 153 41.543
8 g9156.t16 SMART SM00212 ubc_7 7 164 2.2E-69
4 g9156.t16 SUPERFAMILY SSF54495 UBC-like 4 162 3.81E-58

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed