General information for g9158.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Importin-5.
Parent gene
- The parent gene g9158 is located on chr_1: 536308..537628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9158 | g9158.t2 | isoform | g9158.t2 | 531410 | 533040 |
| chr_1 | g9158 | g9158.t2 | exon | g9158.t2.exon1 | 531410 | 532542 |
| chr_1 | g9158 | g9158.t2 | TTS | g9158.t2 | 531439 | 531439 |
| chr_1 | g9158 | g9158.t2 | cds | g9158.t2.CDS1 | 532164 | 532542 |
| chr_1 | g9158 | g9158.t2 | exon | g9158.t2.exon2 | 532728 | 533040 |
| chr_1 | g9158 | g9158.t2 | cds | g9158.t2.CDS2 | 532728 | 532990 |
| chr_1 | g9158 | g9158.t2 | TSS | g9158.t2 | NA | NA |
Sequences
>g9158.t2 Gene=g9158 Length=1446
AATTTTGTGGTCCATCATGCGCACAATATCAGTCCTGTTTTCTTCCATTGATGATTCAAT
ACTGTAAAGATAAACAGCCAGAGGTGCGTCAAGCAGCAATGTATGGATGTGGAATTTTAG
CTCAGCATGGAGGCGAACAATTTGCACAGACTTGTTCAATGGTTATGCCAATTCTTGTTG
AAGCTATAATGGCATCGGATGCAAGAGAACCTGAAAATATGACCGTGACGGAGAACGCTA
TCTCAGCAGTAGCAAAAATTATGAAATATAATAACTCGGCTATTACAAATGGTGACGAAA
TCATTAACATTTGGTTTCAAAGTTTGCCAGTAACAGAAGACGATGAAGAAGCTCCTCATA
TATATGGTTATCTATGCGATCTAATTCAATCAAATCATCCAATAATTTTGGGATCAGACA
ACAGCAATTTACCGCGCATTGTTGCACTCATAGGTGATGCATTTTATCACAGTGTCATTC
AAATTATTACTCCGACTAATGATAATATCGACAACATGCGATCAGACTATGTTCAACGAA
ATAATGACGTTGCTGGACGTATGCTGAATATTGTTAAGCAAATTCAATCTAACTCTGAAA
TTTTCAATGCGTGTATCTCATTGATTAACGAACAGCAAAAGAGTGCATTAGAAGAAGCAA
TGAAGAGCTTTGCTAATATCACTGTTGCATAAAAATTCTTTATTTTTCGCTAACAATAAT
GAAACAGAAAGAAATAGAGGAATTCGTAAAACATACACATCCGTTTTATTCTTTTTTCGC
ATTTAACAACACTAGTGATGTATTCATGGACAAATTGAATATTAAATTGGATGTGAAATT
TACGAAAAATATATTTTTATTCAAGATAAAAAATTATTTTTACATTACATAAATCATGTT
TCAAAATTACTCTCATTAAGTTTTTTTTTTTGGAAAAAAAAGAAAGAAAAGAAATTATTC
AGGGCAGAGAGGATTTTCTTTGCACATTATTTACACATGCATCATTACTGTAAAACTAAT
AATCTCTCATTTCCTTTAAAATAATTAAACATTTTTTTAATGAAAAAAATTGGCTCCTAT
TTATGACTAAATTTATTTTCTGTACCACACAACCATCACATACACGTGCATAAAATATAA
ATATATACATATTGATTAATAATTTATTAATTTTTTATACGAAAAGGAAAAAAAGTTGTG
CATGGCAAAAATCTATCGAAATTTCTTGTTGTATTGTATAAAGAAGTTTTTTCAATTCAA
TTTCCGAAATGAATTGAAAGTTTTATCAATTTCTTTCTTTTCCGCTACTTCAAAGTTTCT
TTTTATGTATATCAATGAACGAGAAAAAATTGTCTTACAAATGAATATTTTTTGTATTTG
AAGAAATATACACACACCAGAATTCGTTTCTAAATTCAAAAAAAGTTTTTTGTATTTTAT
TATTCT
>g9158.t2 Gene=g9158 Length=213
MIQYCKDKQPEVRQAAMYGCGILAQHGGEQFAQTCSMVMPILVEAIMASDAREPENMTVT
ENAISAVAKIMKYNNSAITNGDEIINIWFQSLPVTEDDEEAPHIYGYLCDLIQSNHPIIL
GSDNSNLPRIVALIGDAFYHSVIQIITPTNDNIDNMRSDYVQRNNDVAGRMLNIVKQIQS
NSEIFNACISLINEQQKSALEEAMKSFANITVA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9158.t2 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 185 | 0 |
| 2 | g9158.t2 | PANTHER | PTHR10527 | IMPORTIN BETA | 3 | 202 | 0 |
| 3 | g9158.t2 | PANTHER | PTHR10527:SF22 | IMPORTIN-5 | 3 | 202 | 0 |
| 1 | g9158.t2 | Pfam | PF18816 | Importin repeat | 97 | 144 | 0 |
| 4 | g9158.t2 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 206 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006606 | protein import into nucleus | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
