General information for g9158.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Importin-5.
Parent gene
- The parent gene g9158 is located on chr_1: 536308..537628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9158 | g9158.t4 | TTS | g9158.t4 | 531439 | 531439 |
| chr_1 | g9158 | g9158.t4 | isoform | g9158.t4 | 532164 | 532830 |
| chr_1 | g9158 | g9158.t4 | exon | g9158.t4.exon1 | 532164 | 532190 |
| chr_1 | g9158 | g9158.t4 | cds | g9158.t4.CDS1 | 532166 | 532190 |
| chr_1 | g9158 | g9158.t4 | exon | g9158.t4.exon2 | 532246 | 532542 |
| chr_1 | g9158 | g9158.t4 | cds | g9158.t4.CDS2 | 532246 | 532542 |
| chr_1 | g9158 | g9158.t4 | exon | g9158.t4.exon3 | 532728 | 532830 |
| chr_1 | g9158 | g9158.t4 | cds | g9158.t4.CDS3 | 532728 | 532822 |
| chr_1 | g9158 | g9158.t4 | TSS | g9158.t4 | NA | NA |
Sequences
>g9158.t4 Gene=g9158 Length=427
CTGAAAATATGACCGTGACGGAGAACGCTATCTCAGCAGTAGCAAAAATTATGAAATATA
ATAACTCGGCTATTACAAATGGTGACGAAATCATTAACATTTGGTTTCAAAGTTTGCCAG
TAACAGAAGACGATGAAGAAGCTCCTCATATATATGGTTATCTATGCGATCTAATTCAAT
CAAATCATCCAATAATTTTGGGATCAGACAACAGCAATTTACCGCGCATTGTTGCACTCA
TAGGTGATGCATTTTATCACAGTGTCATTCAAATTATTACTCCGACTAATGATAATATCG
ACAACATGCGATCAGACTATGTTCAACGAAATAATGACGTTGCTGGACGTATGCTGAATA
TTGTTAAGCAAATTCAATCTAACTCTGAAATTTTCAATGCAGCTTTGCTAATATCACTGT
TGCATAA
>g9158.t4 Gene=g9158 Length=139
MTVTENAISAVAKIMKYNNSAITNGDEIINIWFQSLPVTEDDEEAPHIYGYLCDLIQSNH
PIILGSDNSNLPRIVALIGDAFYHSVIQIITPTNDNIDNMRSDYVQRNNDVAGRMLNIVK
QIQSNSEIFNAALLISLLH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9158.t4 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 128 | 0.0e+00 |
| 2 | g9158.t4 | PANTHER | PTHR10527 | IMPORTIN BETA | 3 | 100 | 0.0e+00 |
| 3 | g9158.t4 | PANTHER | PTHR10527:SF22 | IMPORTIN-5 | 3 | 100 | 0.0e+00 |
| 1 | g9158.t4 | Pfam | PF18816 | Importin repeat | 41 | 88 | 0.0e+00 |
| 4 | g9158.t4 | SUPERFAMILY | SSF48371 | ARM repeat | 3 | 82 | 7.2e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006606 | protein import into nucleus | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
