Gene loci information

Transcript annotation

  • This transcript has been annotated as Importin-5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9158 g9158.t5 isoform g9158.t5 533311 534874
chr_1 g9158 g9158.t5 exon g9158.t5.exon1 533311 534874
chr_1 g9158 g9158.t5 cds g9158.t5.CDS1 533313 534824
chr_1 g9158 g9158.t5 TSS g9158.t5 NA NA
chr_1 g9158 g9158.t5 TTS g9158.t5 NA NA

Sequences

>g9158.t5 Gene=g9158 Length=1564
GTTTAGGAGGTAAAGCCATTCTTCCTCACATTGTTTCAAACATTCCAACTATGCTAAACA
ATCCCGATTGGAGATATCGTCATGCTGCTCTCATGGCAATCAGTGCTGCTGGCGAAGGAT
GTCATAAACAAATGGAAGCAATGTTGGATAGTGTCACTGAAGGAACATTGAAATATTTGG
CAGATCCTCATCCTCGTGTTCGATATGCTGCTTGTAATGCAATTGGTCAAATGGCAACAG
ATTTTGCTCCAGTTTTCGAAAAAAAGTTCCATGCTCATGTTATTCCTGGCCTATTGAGTC
TTCTAGATGACCATGCAAATCCTCGTGTGCAAGCTCATGCAGGTGCTGCTTTAGTTAATT
TCAGCGAAGATTGTCCAAAAACTATTCTCACGCGCTATCTTGACGGAATAATGAGTAAAT
TAGAAGCAATTTTAACAACAAAGTTTAATGAACTTGTTGAGAAAGGCACAAAGTTGGTAC
TTGAACAGGTCGTTACAACAATTGCAAGCGTTGCTGATACAACAGAAAAGGATTTTGTTG
TTTATTACGATCGTCTCATGCCATGCTTGAAATATTTGATTGCCAATGCTAATACTGATG
ATTTGAAAATGTTACGAGGTAAAACAATTGAATGTGTCAGTTTGATTGGTTTAGCTGTTG
GAGCTGAAAAATTCATGAGTGATGCAAGTGAAATTATGGATATGTTATTGAAGACACATA
CAGAAGGAAATTTACCTGATGACGACCCACAAACAACTTATCTAATCTCGGCATGGGCTA
GAATATGTAAAATTTTGGGCAAACAATTTGAACAATATTTGCCACTTGTTATGGGACCAG
TAATGAAAACAGCAGCTATGAAACCTGAAGTCGCAGTTTTAGATAATGATGAAATTCAAG
ATGTTGAAGCAGATCCAGATTGGCAATTTGTAAATTTAAGTGATCAACAGAACTTTGGAA
TTCGTACAGCTGGCTTAGAAGATAAAGCTGCGGCATGTGAAATGCTCGTTTGTTATGCTC
GTGAATTAAAAGAAGGATTTGCCAATTATGCAGAAGAGGTCGTTCGACTTATGGTACCGA
TGTTTAAATTTTATTTCCATGACGGTGTGAGACGAGCTGCAGCAGAATCGCTTCCTTATC
TATTGACTTGCGCTAAAATTAAAGGCCAACAATATTTAGAAAACATGTGGGCTTATATTT
GTCCTGAACTTCTTAAAGCCATTGATACTGAACCTGAATCAGAGGTTATTGCTGAATTAT
TACAATCGCTAGCAAAATGTATTGAAACTTTGGGTGCAAATTGTTTATCACAAGAGGCAA
TGGATGAGGTTTTAAAAATTATCAATCGATTCATGAATGAACATTTTGAAAAGGCCGACA
AACGAGCACAAGCAAGAAATGAAGAGGACTATGATGAAGCGGTTGAAGAGCAATTAGCTG
AGGAAGATGAAACAGATGTGTACCTGCTATCGCGCATTGCTGATATCATTCATTCCCTAT
TTTCGACACAAAAAACTTTATTTTTGCCTTATTTCGAGCAAGTTGCACCACATTTTATAA
AGCT

>g9158.t5 Gene=g9158 Length=504
MLNNPDWRYRHAALMAISAAGEGCHKQMEAMLDSVTEGTLKYLADPHPRVRYAACNAIGQ
MATDFAPVFEKKFHAHVIPGLLSLLDDHANPRVQAHAGAALVNFSEDCPKTILTRYLDGI
MSKLEAILTTKFNELVEKGTKLVLEQVVTTIASVADTTEKDFVVYYDRLMPCLKYLIANA
NTDDLKMLRGKTIECVSLIGLAVGAEKFMSDASEIMDMLLKTHTEGNLPDDDPQTTYLIS
AWARICKILGKQFEQYLPLVMGPVMKTAAMKPEVAVLDNDEIQDVEADPDWQFVNLSDQQ
NFGIRTAGLEDKAAACEMLVCYARELKEGFANYAEEVVRLMVPMFKFYFHDGVRRAAAES
LPYLLTCAKIKGQQYLENMWAYICPELLKAIDTEPESEVIAELLQSLAKCIETLGANCLS
QEAMDEVLKIINRFMNEHFEKADKRAQARNEEDYDEAVEEQLAEEDETDVYLLSRIADII
HSLFSTQKTLFLPYFEQVAPHFIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g9158.t5 PANTHER PTHR10527 IMPORTIN BETA 1 502 0e+00
4 g9158.t5 PANTHER PTHR10527:SF22 IMPORTIN-5 1 502 0e+00
1 g9158.t5 Pfam PF13513 HEAT-like repeat 7 61 3e-07
2 g9158.t5 Pfam PF18829 Importin repeat 6 399 502 0e+00
5 g9158.t5 SUPERFAMILY SSF48371 ARM repeat 1 461 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006606 protein import into nucleus BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values