General information for g9158.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Importin-5.
Parent gene
- The parent gene g9158 is located on chr_1: 536308..537628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9158 | g9158.t6 | TTS | g9158.t6 | 533366 | 533366 |
| chr_1 | g9158 | g9158.t6 | isoform | g9158.t6 | 533932 | 536308 |
| chr_1 | g9158 | g9158.t6 | exon | g9158.t6.exon1 | 533932 | 535685 |
| chr_1 | g9158 | g9158.t6 | cds | g9158.t6.CDS1 | 533934 | 535685 |
| chr_1 | g9158 | g9158.t6 | exon | g9158.t6.exon2 | 535748 | 535897 |
| chr_1 | g9158 | g9158.t6 | cds | g9158.t6.CDS2 | 535748 | 535897 |
| chr_1 | g9158 | g9158.t6 | exon | g9158.t6.exon3 | 536228 | 536308 |
| chr_1 | g9158 | g9158.t6 | cds | g9158.t6.CDS3 | 536228 | 536308 |
| chr_1 | g9158 | g9158.t6 | TSS | g9158.t6 | 536365 | 536365 |
Sequences
>g9158.t6 Gene=g9158 Length=1985
ATGGCCGAAGAAGACACACGATTTTCAAGTTTACTCACTTCCTTGCTCTCGATAGAAAAC
GATGAAAGAACTGCGGCAGAGGAAGCATACAATAATTTGGCTACAGAAGTAAAAGTCACA
TTATTACTGCGAGCTCTACAAAATGGACAAGTTTCAGAGGATGGAAGTTTGATGGCGGCT
GTTCTTTTAAGACGAGTCTTTTCATCAGATTTCCAGAACTTCTTTCCTAAATTAACGCCA
GAACAACAAGCCGAATTGAAACAACAAATTCTTTTGCTGCTACAAAAAGATGTTAGTCCA
AATTTAAGAAGAAAAATTTGTGAAGTTGTGGCAGAAGTGACTCGTAATTTTATTGACGAT
GATGGAAACAATCAATGGCCTGAAACACTTCAGCTTCTCTTTCAATGTGCAAACACTCCG
AATGCAATTTTGCAGGAATCAGCATTGCGCATTTTCGCATCTGTGCCAGGAATATTTGGC
AATCAACAAAATCATTATTTGCAAGTCATAAAAGAAATGTTGATGAAATATTTAGATCCA
TCCTCCACTCCAGAAGTTCGTTTTCAGGCAGTTCGTGCTGTTATTGCATTCATTCTTTTA
AATGACAAAGAAGTTGAAATTCAAAAAGCATTATCAGATTTGCTTCCACAAATAATCATG
ATTACAGCAGATTCAATCAAAGCTGAAGAAGATCAGACACTCATCAAATTACTTATTGAC
ATGTCTGAAAATGTACCAAAATTTTTGAGACCACAATTAGAGGCAATTTTTGAAATGTGC
ATTAATGTTTTTAAAAGTGAAGATGTTGAAGATTCATGGAGACATTTGGCATTAGAAGTT
ATGGTTTCATTGTCAGAAAATGCATCAGCAATGGTAAGAAAGAAAGCTGAAAAGTATATT
GCTGCATTAGTTCCACTCGTTCTTAAAATGATGACCGAATTAGAAGACGATGAAGAATGG
TCTGTGTCAGATGAAATTGAAGATGACGATACTGGAGAGAATAATGTTATAGCTGAATCA
GCACTTGATCGTTTGGCGTGTGGTTTAGGAGGTAAAGCCATTCTTCCTCACATTGTTTCA
AACATTCCAACTATGCTAAACAATCCCGATTGGAGATATCGTCATGCTGCTCTCATGGCA
ATCAGTGCTGCTGGCGAAGGATGTCATAAACAAATGGAAGCAATGTTGGATAGTGTCACT
GAAGGAACATTGAAATATTTGGCAGATCCTCATCCTCGTGTTCGATATGCTGCTTGTAAT
GCAATTGGTCAAATGGCAACAGATTTTGCTCCAGTTTTCGAAAAAAAGTTCCATGCTCAT
GTTATTCCTGGCCTATTGAGTCTTCTAGATGACCATGCAAATCCTCGTGTGCAAGCTCAT
GCAGGTGCTGCTTTAGTTAATTTCAGCGAAGATTGTCCAAAAACTATTCTCACGCGCTAT
CTTGACGGAATAATGAGTAAATTAGAAGCAATTTTAACAACAAAGTTTAATGAACTTGTT
GAGAAAGGCACAAAGTTGGTACTTGAACAGGTCGTTACAACAATTGCAAGCGTTGCTGAT
ACAACAGAAAAGGATTTTGTTGTTTATTACGATCGTCTCATGCCATGCTTGAAATATTTG
ATTGCCAATGCTAATACTGATGATTTGAAAATGTTACGAGGTAAAACAATTGAATGTGTC
AGTTTGATTGGTTTAGCTGTTGGAGCTGAAAAATTCATGAGTGATGCAAGTGAAATTATG
GATATGTTATTGAAGACACATACAGAAGGAAATTTACCTGATGACGACCCACAAACAACT
TATCTAATCTCGGCATGGGCTAGAATATGTAAAATTTTGGGCAAACAATTTGAACAATAT
TTGCCACTTGTTATGGGACCAGTAATGAAAACAGCAGCTATGAAACCTGAAGTCGCAGTT
TTAGATAATGATGAAATTCAAGATGTTGAAGCAGATCCAGATTGGCAATTTGTAAATTTA
AGTGA
>g9158.t6 Gene=g9158 Length=661
MAEEDTRFSSLLTSLLSIENDERTAAEEAYNNLATEVKVTLLLRALQNGQVSEDGSLMAA
VLLRRVFSSDFQNFFPKLTPEQQAELKQQILLLLQKDVSPNLRRKICEVVAEVTRNFIDD
DGNNQWPETLQLLFQCANTPNAILQESALRIFASVPGIFGNQQNHYLQVIKEMLMKYLDP
SSTPEVRFQAVRAVIAFILLNDKEVEIQKALSDLLPQIIMITADSIKAEEDQTLIKLLID
MSENVPKFLRPQLEAIFEMCINVFKSEDVEDSWRHLALEVMVSLSENASAMVRKKAEKYI
AALVPLVLKMMTELEDDEEWSVSDEIEDDDTGENNVIAESALDRLACGLGGKAILPHIVS
NIPTMLNNPDWRYRHAALMAISAAGEGCHKQMEAMLDSVTEGTLKYLADPHPRVRYAACN
AIGQMATDFAPVFEKKFHAHVIPGLLSLLDDHANPRVQAHAGAALVNFSEDCPKTILTRY
LDGIMSKLEAILTTKFNELVEKGTKLVLEQVVTTIASVADTTEKDFVVYYDRLMPCLKYL
IANANTDDLKMLRGKTIECVSLIGLAVGAEKFMSDASEIMDMLLKTHTEGNLPDDDPQTT
YLISAWARICKILGKQFEQYLPLVMGPVMKTAAMKPEVAVLDNDEIQDVEADPDWQFVNL
S
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9158.t6 | Gene3D | G3DSA:1.25.10.10 | - | 2 | 651 | 0.0e+00 |
| 3 | g9158.t6 | PANTHER | PTHR10527 | IMPORTIN BETA | 4 | 660 | 0.0e+00 |
| 4 | g9158.t6 | PANTHER | PTHR10527:SF22 | IMPORTIN-5 | 4 | 660 | 0.0e+00 |
| 2 | g9158.t6 | Pfam | PF18808 | Importin repeat | 267 | 356 | 0.0e+00 |
| 1 | g9158.t6 | Pfam | PF13513 | HEAT-like repeat | 371 | 425 | 4.0e-07 |
| 6 | g9158.t6 | SMART | SM01349 | TOG_3 | 347 | 593 | 3.2e-03 |
| 5 | g9158.t6 | SUPERFAMILY | SSF48371 | ARM repeat | 8 | 632 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006606 | protein import into nucleus | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
