General information for g9186.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Choline-phosphate cytidylyltransferase B.
Parent gene
- The parent gene g9186 is located on chr_1: 680537..681647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9186 | g9186.t1 | TSS | g9186.t1 | 678431 | 678431 |
| chr_1 | g9186 | g9186.t1 | isoform | g9186.t1 | 678569 | 681517 |
| chr_1 | g9186 | g9186.t1 | exon | g9186.t1.exon1 | 678569 | 678676 |
| chr_1 | g9186 | g9186.t1 | cds | g9186.t1.CDS1 | 678569 | 678676 |
| chr_1 | g9186 | g9186.t1 | exon | g9186.t1.exon2 | 680537 | 681517 |
| chr_1 | g9186 | g9186.t1 | cds | g9186.t1.CDS2 | 680537 | 681517 |
| chr_1 | g9186 | g9186.t1 | TTS | g9186.t1 | 681754 | 681754 |
Sequences
>g9186.t1 Gene=g9186 Length=1089
ATGGAATCGCGTAAAAGACCACATGAAAAAGAAACAATGTTTGAAATTGTGAAAGATGAC
TCCAAAAATAACATTAAAAGTTCCTATAAATATATAAGCGATAAGCCGACTTTATGCAAG
CCTGCGCCATTTTCAACAGATCCAGAAGCGATTGCAGAGCGAGAAGCATGTGATTATAGT
CACAGAATAACATTAGATATGGCAAGAAATGGAACTGCCAATCGTAAGATTCGTATCTAC
ACTGATGGCATATATGATCTATTTCATCAAGGACATGCACGACAAATGATGCAAGCAAAG
AATATTTTTCCCAATTCTGAAGTTTATCTCATCATTGGAGCATGCAGCGATGAATTGACT
CATTCAATGAAAGGAAGAACAGTAATGACAGATGTTGAACGATACGAAGCTCTCAGACAT
TGCCGCTATGTTGATGAAATTATTCGCGATGCTCCATGGAAGATTACTGATGAGTTCATG
GAGAAACACAAGATTGACTTTGTGGCTCAAGACTCGACGCCTTACGTCACACAAGATTGT
GACGATCTTTACAAAGAGATAAAAGAAAAGGGGTATTTTGTAGCAACTGAAAGAACTGAA
GGCGTGTCAACTTCAGGATTAATTGCACGTCTAGTTCGCGATTACGACATTTATGTTCGC
AGAAATTTAGCTCGTGGATATTCAGCTAAAGAGCTGAATGTTTCATTTTTGAAGGAGAAG
AAATTCAGATTACAGAACAAACTTGATGAAATTAAAGACAAAGGCAAAAAGGTAAAGGAA
GATGTCATAATGAAATGGGAGGAAAAATCAAATGAACTTATGAGAGCGTTCCTTATGTTA
TTTGGTCGAGATAATTGGAGTCAAAAATGGGACAAATCAAAAGATGCTATTAAAGATGTA
ATCAGTTTACATCCAAAGAAGAGATCAAATTTCTTTAAATCAATTAAAGAACATGATGAT
GCATCGCCTCCCAAAAAAATTCCTCGCATTAAGCACTATTCAATCACATCCGATGAAGAC
GATGAAGAATTGAGCAATGGAAATAAAGGATTTCCTTCAATTACATTTACACTACCATCT
TCGATTTAA
>g9186.t1 Gene=g9186 Length=362
MESRKRPHEKETMFEIVKDDSKNNIKSSYKYISDKPTLCKPAPFSTDPEAIAEREACDYS
HRITLDMARNGTANRKIRIYTDGIYDLFHQGHARQMMQAKNIFPNSEVYLIIGACSDELT
HSMKGRTVMTDVERYEALRHCRYVDEIIRDAPWKITDEFMEKHKIDFVAQDSTPYVTQDC
DDLYKEIKEKGYFVATERTEGVSTSGLIARLVRDYDIYVRRNLARGYSAKELNVSFLKEK
KFRLQNKLDEIKDKGKKVKEDVIMKWEEKSNELMRAFLMLFGRDNWSQKWDKSKDAIKDV
ISLHPKKRSNFFKSIKEHDDASPPKKIPRIKHYSITSDEDDEELSNGNKGFPSITFTLPS
SI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9186.t1 | CDD | cd02174 | CCT | 75 | 226 | 9.05014E-78 |
| 5 | g9186.t1 | Coils | Coil | Coil | 234 | 254 | - |
| 4 | g9186.t1 | Gene3D | G3DSA:3.40.50.620 | HUPs | 37 | 283 | 2.7E-90 |
| 2 | g9186.t1 | PANTHER | PTHR10739 | CYTIDYLYLTRANSFERASE | 35 | 340 | 1.7E-104 |
| 1 | g9186.t1 | Pfam | PF01467 | Cytidylyltransferase-like | 80 | 210 | 6.5E-25 |
| 3 | g9186.t1 | SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 77 | 210 | 9.15E-21 |
| 6 | g9186.t1 | TIGRFAM | TIGR00125 | cyt_tran_rel: cytidyltransferase-like domain | 78 | 146 | 4.5E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00968 (choline-phosphate cytidylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
