General information for g9217.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Triokinase/FMN cyclase.
Parent gene
- The parent gene g9217 is located on chr_1: 888460..890323 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9217 | g9217.t1 | TSS | g9217.t1 | 888409 | 888409 |
| chr_1 | g9217 | g9217.t1 | isoform | g9217.t1 | 888460 | 890323 |
| chr_1 | g9217 | g9217.t1 | exon | g9217.t1.exon1 | 888460 | 888604 |
| chr_1 | g9217 | g9217.t1 | cds | g9217.t1.CDS1 | 888460 | 888604 |
| chr_1 | g9217 | g9217.t1 | exon | g9217.t1.exon2 | 888661 | 888760 |
| chr_1 | g9217 | g9217.t1 | cds | g9217.t1.CDS2 | 888661 | 888760 |
| chr_1 | g9217 | g9217.t1 | exon | g9217.t1.exon3 | 888832 | 890323 |
| chr_1 | g9217 | g9217.t1 | cds | g9217.t1.CDS3 | 888832 | 890323 |
| chr_1 | g9217 | g9217.t1 | TTS | g9217.t1 | 890592 | 890592 |
Sequences
>g9217.t1 Gene=g9217 Length=1737
ATGAATTCAATAAGTCTTGAAAATTCACTTTCTGGCTATGTACAATTACATAAGGACTTA
ATTTATATTAAAAATCATAATATTGTTATGCGAAATGATGATGAATTTAAGAAAGATGAA
AAATCAGTGATAATAATTAGTGGAGGTGGTTCAGGACATGAACCTTTTCCTATTAGTTTT
ATTGGTAAAGGTAGCTTAAATGTAGCTGTATGCGGAGAATTATTTACATCTCCATCCGTT
ACTAGTTGCTTAGCATCAATTTTATTATCGTCGCAAAACAATCCAAAAAGAGAGATTTTA
ATTTTTATTAATAATTATACAGGAGATAGATTAAATTTTGGATTGGCTATAGAAAAAGCA
CGCACGATTTATAAATATGAAAAAATAAAAGCAATCACTATCGATGACGATTGTGCAATT
GATAATCCACCAAATTCAACTGGGAGAAGAGGCTTAACAGCAATAAACATTGCTATAAAG
GTAGCGGGTGCTTTAGTAGCTCAAGGCTATACACTTGATAGAATTCATGAATATTGCAGT
TATTTATTGTGTAAAAGGATGATTCGTTCAATTGGATTTTCATTTCAATATGATAACGTC
AATGCAACATTACGAAATATCAATATTGGATATGGAATACACGGTGAAAGTGGCTCTTTG
AAAATAAATTATGCAAACTGCTTTAACTCCATTATTGCCGTTCTACTGGAGAAATTAAAA
ATTGATGATATAAAATGCGATAAAATCGCTTTACTCTTCAATAATTTAGGTGGTGCATCT
GAATTTATTTTCTCGCATTTTATCAAAGAGTTTATGGAATTTATGCGAAAATATTCGTTT
AATGTGGTTTCTATATACAGAGGACAATTTTTGTCATCACTAAACGCACAGGGTATCGGT
ATTTCGTTAATCAAATGTGATGATGATGTCAATGCCATGAATATTGTTGCACTGTTAGAC
TATCCATGTACTGCAGCCTCAGGTCATTTATTCAACTCTCTTCGATATGATTATGTTTCA
AAAGAGATTGAATTTCATATTCCAAAAAGTAAACAAATTGAATTCTGCGAAAAATCTCTA
TATGTGACACAGCATGAAATAGTCATAGCGAAAAAAATTCTAATGAAAGTTTGCGAGGCA
GTAAATTATGCAAAAGCAGAACTCAATGAAATTGATCGAGAATTCGGTGATGGTGATACT
GGCACAACTATCTCAAACGGTTCGAAAAGCATATTGAACGCCATCGAAATGCTTAATTTC
TCAAACCCACACTTTTTGCTTATTGCTCTTAGCGATATTTTGATGAAAGAAATGGGTGGA
ACTTCAGGTGCTGTATTCTCAATATTCTTTCAATGTGCTTCAAATGCTTTTAACGAACGA
AATGAATATTCGATTGAAAACTGGTTGAATGCCATTTCATTAGGCATAAAAGGAATAATT
GTATATGGAAAAGCTCAATTTAATGATCGAACTTTATTAGATTCACTTAAATCTGGCTAT
GAAGCAATGAATACAGCAATTAATGAGTCATCATCTACTCTTAAATGTGTAGAGGCATTT
GCAAAAGGTTGCAATGATGGTGCAGAAAAGACTAAATATATGAGAGCAAAAAGTGGAAGA
GCTGCATATTCAGCAGCAGATAATAAAAGTAATATGGATTATAAATATCCAGATAGTGGA
GCAATGGCTATTTCAATTATTGCTAAGACTATCAATAATGTGTACAAGGGCGAATAA
>g9217.t1 Gene=g9217 Length=578
MNSISLENSLSGYVQLHKDLIYIKNHNIVMRNDDEFKKDEKSVIIISGGGSGHEPFPISF
IGKGSLNVAVCGELFTSPSVTSCLASILLSSQNNPKREILIFINNYTGDRLNFGLAIEKA
RTIYKYEKIKAITIDDDCAIDNPPNSTGRRGLTAINIAIKVAGALVAQGYTLDRIHEYCS
YLLCKRMIRSIGFSFQYDNVNATLRNINIGYGIHGESGSLKINYANCFNSIIAVLLEKLK
IDDIKCDKIALLFNNLGGASEFIFSHFIKEFMEFMRKYSFNVVSIYRGQFLSSLNAQGIG
ISLIKCDDDVNAMNIVALLDYPCTAASGHLFNSLRYDYVSKEIEFHIPKSKQIEFCEKSL
YVTQHEIVIAKKILMKVCEAVNYAKAELNEIDREFGDGDTGTTISNGSKSILNAIEMLNF
SNPHFLLIALSDILMKEMGGTSGAVFSIFFQCASNAFNERNEYSIENWLNAISLGIKGII
VYGKAQFNDRTLLDSLKSGYEAMNTAINESSSTLKCVEAFAKGCNDGAEKTKYMRAKSGR
AAYSAADNKSNMDYKYPDSGAMAISIIAKTINNVYKGE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9217.t1 | Gene3D | G3DSA:3.40.50.10440 | Dihydroxyacetone kinase; domain 1 | 5 | 182 | 0.000 |
| 7 | g9217.t1 | Gene3D | G3DSA:3.30.1180.20 | Dihydroxyacetone kinase; domain 2 | 196 | 330 | 0.000 |
| 9 | g9217.t1 | Gene3D | G3DSA:1.25.40.340 | - | 365 | 576 | 0.000 |
| 3 | g9217.t1 | PANTHER | PTHR28629 | TRIOKINASE/FMN CYCLASE | 8 | 574 | 0.000 |
| 1 | g9217.t1 | Pfam | PF02733 | Dak1 domain | 12 | 322 | 0.000 |
| 2 | g9217.t1 | Pfam | PF02734 | DAK2 domain | 395 | 571 | 0.000 |
| 11 | g9217.t1 | ProSiteProfiles | PS51481 | DhaK domain profile. | 1 | 329 | 67.473 |
| 10 | g9217.t1 | ProSiteProfiles | PS51480 | DhaL domain profile. | 368 | 573 | 26.342 |
| 6 | g9217.t1 | SMART | SM01120 | Dak2_2 | 394 | 573 | 0.000 |
| 4 | g9217.t1 | SUPERFAMILY | SSF82549 | DAK1/DegV-like | 7 | 326 | 0.000 |
| 5 | g9217.t1 | SUPERFAMILY | SSF101473 | DhaL-like | 369 | 575 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006071 | glycerol metabolic process | BP |
| GO:0004371 | glycerone kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00863 (triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
