General information for g9242.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alanine–glyoxylate aminotransferase 2, mitochondrial.
Parent gene
- The parent gene g9242 is located on chr_1: 1055931..1058606 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9242 | g9242.t5 | isoform | g9242.t5 | 1055285 | 1057262 |
| chr_1 | g9242 | g9242.t5 | exon | g9242.t5.exon1 | 1055285 | 1055874 |
| chr_1 | g9242 | g9242.t5 | cds | g9242.t5.CDS1 | 1055848 | 1055874 |
| chr_1 | g9242 | g9242.t5 | exon | g9242.t5.exon2 | 1055958 | 1056071 |
| chr_1 | g9242 | g9242.t5 | cds | g9242.t5.CDS2 | 1055958 | 1056071 |
| chr_1 | g9242 | g9242.t5 | exon | g9242.t5.exon3 | 1056247 | 1056812 |
| chr_1 | g9242 | g9242.t5 | cds | g9242.t5.CDS3 | 1056247 | 1056756 |
| chr_1 | g9242 | g9242.t5 | exon | g9242.t5.exon4 | 1056928 | 1057262 |
| chr_1 | g9242 | g9242.t5 | TSS | g9242.t5 | NA | NA |
| chr_1 | g9242 | g9242.t5 | TTS | g9242.t5 | NA | NA |
Sequences
>g9242.t5 Gene=g9242 Length=1605
GGTTAGATATGATTTTAGCAAGGTGAAGACACTTTGATTCATTGAAAACATTTGAATGTT
TGGAAATTCTAATTATTTTCAAAATTCCCAATATTGATAGAAAATTAGTTGATATTTGAT
TTATTTTGCATTATTTCTTTGGTTTATTATTAATTTAAAGTATTTTTTTACTAAATATGA
CGAGTTTTTTAAAAGTTTTCATAAAATATCTAAATTTGCAAAATGTAAACAAAAAAATTA
AAACAAAAAGTTTGTTTACCCCTTAAATTTCTCAATTTACAAAATTTGACAATTTCGATA
CAAATAAGGAGTAAATTAAATACTGAAACAATCAACACAATCAACATGGCATTATCCAGT
ACCAGGTCTAAAAAATGGTATTCATCATGTCATGAATCCCGATCCATATACCGGTATATG
GGGAGGAAGCAATTGTCGAGATTCGCCTGTTCAAACTAATCGCAAATGTGATTGCACACA
AGGGAAATGTCTTGCCGAAGATAATTACATTAATCAACTTGAAAGCGAGTTTAAATATTC
ATTGCCTAGAGGTAAATTGGCTGCATTGTTTGCTGAGTCAATTCAGGGTGTCGGCGGCAG
TGTGCAATTCCCGAGAAATTATCTCAAACGAGCGGCTGAAATTGTTCGAGCTGGTGGCGG
TCTCATTGTCAGTGATGAAGTTCAAACAGGCTTTGGAAGAACAGGTGAAAATTATTGGGG
TTTTGAGAATCATGGCATTGTGCCTGATATTGTGACAATGGCAAAAGGTATTGGAAATGG
CTTTCCACTTGGCGCTGTTGTTACCACACAGAAAATTGCACAAGTTATGACTGAGGCAGT
TCATTTTAATACATTCGGTGGAAATCCAATGGCTTGTGCGGTTGGAAAAGCCGTATTGGA
TGTGATTGACGAAGAGAAGCTACAACAGAATGCTTTGGATGTTGGAACATATTTACTCAA
GGGATTTGAAATATTACGTGAAAAATATGACATTATTGGCGATGTAAGAGGCAAGGCTCG
ATTGACATTTTCAATACTTTGATCTCTTCCAAAATGCAAATCTACTTCTACCACACTGTT
TCCATCATAGTCGTCATCATTTGTCGTCGTTTGCTCATTTGCATGCGATGTGTTGTCAAA
ACGAGCGAATATCACATTCGAGTGATGCATGAAGCGTCGCTGGTTTCTTATCGCTGCCAT
CAAGCGTGGAATATGTCTGTCATCATAATAGACGATATAAATCAGTGTCATAAACAGCGT
CACAAGAAAAGCGAGCCGAAAATGAATGTGAAAACGTGACCACTCGCATTCGGCGTAAAT
GCAGTGCCCGAAATGAAATAAAATTTTGATTGGCCTGAAAAAGAACATAAAAGAGTCAGA
AAATTAAGTCAAAACTTGTACTCACTTTGAGAATTTTTATTAAGCATCGATTCACGAAGT
TGTTCCATTAAATTAGAACTTAATTCTTTATATTCAAATCGATCGACAATAATGAGCTGC
AAATAATGCTGATTCTTTTCTTTTTCTTTTCCCAATGTCACACTGCAATGATAAATGACC
TTTTTCCGATCTGTTTCACTTGTTGCTGCATTGATTGCTGAAATT
>g9242.t5 Gene=g9242 Length=216
MNPDPYTGIWGGSNCRDSPVQTNRKCDCTQGKCLAEDNYINQLESEFKYSLPRGKLAALF
AESIQGVGGSVQFPRNYLKRAAEIVRAGGGLIVSDEVQTGFGRTGENYWGFENHGIVPDI
VTMAKGIGNGFPLGAVVTTQKIAQVMTEAVHFNTFGGNPMACAVGKAVLDVIDEEKLQQN
ALDVGTYLLKGFEILREKYDIIGDVRGKARLTFSIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9242.t5 | Gene3D | G3DSA:3.40.640.10 | - | 30 | 176 | 6.6E-65 |
| 6 | g9242.t5 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 177 | 208 | 6.6E-65 |
| 2 | g9242.t5 | PANTHER | PTHR45688:SF3 | ALANINE–GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL | 1 | 209 | 7.4E-84 |
| 3 | g9242.t5 | PANTHER | PTHR45688 | - | 1 | 209 | 7.4E-84 |
| 1 | g9242.t5 | Pfam | PF00202 | Aminotransferase class-III | 47 | 208 | 6.3E-48 |
| 5 | g9242.t5 | ProSitePatterns | PS00600 | Aminotransferases class-III pyridoxal-phosphate attachment site. | 92 | 130 | - |
| 4 | g9242.t5 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 47 | 209 | 3.02E-55 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008483 | transaminase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
