General information for g9256.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9256 is located on chr_1: 1331164..1332169 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9256 | g9256.t3 | isoform | g9256.t3 | 1331164 | 1332169 |
| chr_1 | g9256 | g9256.t3 | exon | g9256.t3.exon1 | 1331164 | 1332169 |
| chr_1 | g9256 | g9256.t3 | cds | g9256.t3.CDS1 | 1331165 | 1332169 |
| chr_1 | g9256 | g9256.t3 | TSS | g9256.t3 | NA | NA |
| chr_1 | g9256 | g9256.t3 | TTS | g9256.t3 | NA | NA |
Sequences
>g9256.t3 Gene=g9256 Length=1006
ATGATAGTAACTAGCAGCTTAATACAATCAGTTAATTGTATAAGAGGATGGACTGATCCA
AAAGGACAAATAATAATTGAGAAGGGAACCAGATTGAGCATTAAATGTGTAGTAGAAAGT
GACAATGAAGTTTATTCCAACACACAATTAAGTAAAAGACTTGGCTTCTTCTTCCAAGGA
AATGTGAAAGTTGATCAAAAATATATCAATATTTTAAATGATACTGCAATTGAGTTGGTT
ATACCAAAAGTGCCTGAGCAAGAGTCAATGTTTTTATGCAAATTTGACGATGAAAAAGGA
ATTACATATAATGATGTTAAAGTTGGTCACAAACCAGATGAGATTGAACACATAGATTGT
GTTTCACGCAATTGGGAAAATTTAACATGCACTTTCAAAAAGCCATATAATCCAGTTTAT
GTGCAATATGAGCTTAAATATCGTCTCGATAAATCAAGTTTGGTACACATTTGTCAAGTA
GAATTATCTGATCCAGATATTTTCCAATGCACTGTTGAAGAAGTTTCATATCGTCGTTAC
AGTGAAAATTTTATATTAACACTCACTTCAACTAATCTTTTTGGAACAAGAAATCAATCA
TTTGAGTTTGATAATTTTGCAAGTGTTATTCCCGGAAAAGTGGAAAATCTTAATAAAATT
GAAACATCTGATAATATAACTATATCATGGTTGGCATCAAAGAAACTTGCGGTATTTCCC
AAAAATTTTGACGTTGAAATCTCTATCAATTCTTCACTCGAATGTAATGCTAAAGAAGAG
AAAATTTTATTGCGAAATTTCACTACTCATAAAGAAAAATCAAGTCGCAGTGTTGAAAAG
AATATATTTGAATATACCATACCAGTCAAGTTTCCCAACAAATGGTATGATGTAGGTGTC
AGAATGAAAGTTGCTATGGCAAAAGATGAAGAGAAAATGTGGAGTGAAATGGAAAAAATT
CAAGCTTTCACCTTATCACGTGCTCCTGACAATCCGCCAGAAATTA
>g9256.t3 Gene=g9256 Length=335
MIVTSSLIQSVNCIRGWTDPKGQIIIEKGTRLSIKCVVESDNEVYSNTQLSKRLGFFFQG
NVKVDQKYINILNDTAIELVIPKVPEQESMFLCKFDDEKGITYNDVKVGHKPDEIEHIDC
VSRNWENLTCTFKKPYNPVYVQYELKYRLDKSSLVHICQVELSDPDIFQCTVEEVSYRRY
SENFILTLTSTNLFGTRNQSFEFDNFASVIPGKVENLNKIETSDNITISWLASKKLAVFP
KNFDVEISINSSLECNAKEEKILLRNFTTHKEKSSRSVEKNIFEYTIPVKFPNKWYDVGV
RMKVAMAKDEEKMWSEMEKIQAFTLSRAPDNPPEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9256.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 109 | 211 | 0e+00 |
| 1 | g9256.t3 | SUPERFAMILY | SSF49265 | Fibronectin type III | 109 | 200 | 2e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed