Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g9265 | g9265.t57 | TTS | g9265.t57 | 1368157 | 1368157 |
chr_1 | g9265 | g9265.t57 | isoform | g9265.t57 | 1368172 | 1372354 |
chr_1 | g9265 | g9265.t57 | exon | g9265.t57.exon1 | 1368172 | 1368571 |
chr_1 | g9265 | g9265.t57 | cds | g9265.t57.CDS1 | 1368266 | 1368571 |
chr_1 | g9265 | g9265.t57 | exon | g9265.t57.exon2 | 1368749 | 1369078 |
chr_1 | g9265 | g9265.t57 | cds | g9265.t57.CDS2 | 1368749 | 1369057 |
chr_1 | g9265 | g9265.t57 | exon | g9265.t57.exon3 | 1369217 | 1369237 |
chr_1 | g9265 | g9265.t57 | exon | g9265.t57.exon4 | 1369456 | 1369473 |
chr_1 | g9265 | g9265.t57 | exon | g9265.t57.exon5 | 1372118 | 1372354 |
chr_1 | g9265 | g9265.t57 | TSS | g9265.t57 | NA | NA |
>g9265.t57 Gene=g9265 Length=1006
TAATTATTTATTTATTTTTTAAATCGTCAAACTCCAGTTCTAGCGAGTGATTTTTATAGA
CTTTTGGCTTTCTAAATTAGTTATTTGAAATGTTCAAACACTTGATTGACTTTCTTAATC
CATCAGTGAACGATTTAATCACTTTTACATCATCCTCTGATCCTTAGAAACGTCAAAATA
TTAATAAATTTAATATATCTCGATCTCTCGTGAGATAATTTCAATCGATACTCGAAAATC
CTTCAAAGAGGAAAGATAGACGATTTATAAATACAGGTCTATCATTAATCGTAAATAATG
GGTGCGTACAGATACGTTCAAGAGTTATATCGCAAAAAGCAGAGCGATGTTCTTCGCTAT
TTGCTTCGAGTTAGATGCTGGCAATATCGTCAATTGACTAAATTGCATCGTGCTCCACGT
CCATCACGTCCTGATAAAGCACGTCGTCTTGGTTATCGTGCAAAGCAAGGATTTTTGATC
TATCGCATTCGTGTTCGCCGTGGAGGTCGCAAACGTCCAGTACACAAGGGATGCACATAT
GGCAAACCAAAAAGTCATGGTGTTAACCAATTGAAGCCATACAGAAATTTGCAATCTGTT
GCTGAGGAACGTGTTGGTCGACGATTGGGAGGACTTCGTGTTCTCAATTCATACTGGGTC
GCACAAGATGCTGCATTCAAATATTACGAAGTCATCTGCATCGATCCATTCCACAATGCT
ATTCGTCGTGATCCTAAAGTTAACTGGATTTGTAATGCTGTTCACAAGCATCGTGAATTA
CGCGGACTTACATCTGCCGGAAAGAGCTCACGCGGTATTGGAAAAGGATACAGATATTCA
CAAACTATTGGTGGCTCACGTCGTGCTGCATGGCGTCGAAAGAATCGCCTCCATCTCCGT
CGCTATCGTTAAAATGGAAATACACATTAAATCGATTTATTTTGTGTATATTGTTATAAA
CATCTTAACAATTTTTTTCAAAAATGAATAAATTTCATATATCAAA
>g9265.t57 Gene=g9265 Length=204
MGAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYRAKQGFL
IYRIRVRRGGRKRPVHKGCTYGKPKSHGVNQLKPYRNLQSVAEERVGRRLGGLRVLNSYW
VAQDAAFKYYEVICIDPFHNAIRRDPKVNWICNAVHKHRELRGLTSAGKSSRGIGKGYRY
SQTIGGSRRAAWRRKNRLHLRRYR
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
7 | g9265.t57 | Gene3D | G3DSA:3.40.1120.10 | Ribosomal protein l15e | 1 | 197 | 2.6E-104 |
2 | g9265.t57 | PANTHER | PTHR11847:SF4 | 60S RIBOSOMAL PROTEIN L15 | 1 | 204 | 1.5E-100 |
3 | g9265.t57 | PANTHER | PTHR11847 | RIBOSOMAL PROTEIN L15 | 1 | 204 | 1.5E-100 |
1 | g9265.t57 | Pfam | PF00827 | Ribosomal L15 | 2 | 190 | 1.4E-88 |
6 | g9265.t57 | ProSitePatterns | PS01194 | Ribosomal protein L15e signature. | 46 | 69 | - |
5 | g9265.t57 | SMART | SM01384 | Ribosomal_L15e_2 | 2 | 193 | 2.5E-133 |
4 | g9265.t57 | SUPERFAMILY | SSF54189 | Ribosomal proteins S24e, L23 and L15e | 1 | 194 | 8.15E-90 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005840 | ribosome | CC |
GO:0006412 | translation | BP |
GO:0003735 | structural constituent of ribosome | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.