General information for g9282.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proline dehydrogenase 1, mitochondrial.
Parent gene
- The parent gene g9282 is located on chr_1: 1406797..1409949 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9282 | g9282.t1 | TTS | g9282.t1 | 1405921 | 1405921 |
| chr_1 | g9282 | g9282.t1 | isoform | g9282.t1 | 1406797 | 1409949 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon1 | 1406797 | 1407002 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS1 | 1406797 | 1407002 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon2 | 1407058 | 1407427 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS2 | 1407058 | 1407427 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon3 | 1407482 | 1407643 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS3 | 1407482 | 1407643 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon4 | 1407709 | 1407883 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS4 | 1407709 | 1407883 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon5 | 1407948 | 1408245 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS5 | 1407948 | 1408245 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon6 | 1408321 | 1408538 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS6 | 1408321 | 1408538 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon7 | 1408781 | 1408902 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS7 | 1408781 | 1408902 |
| chr_1 | g9282 | g9282.t1 | exon | g9282.t1.exon8 | 1409650 | 1409949 |
| chr_1 | g9282 | g9282.t1 | cds | g9282.t1.CDS8 | 1409650 | 1409949 |
| chr_1 | g9282 | g9282.t1 | TSS | g9282.t1 | 1410141 | 1410141 |
Sequences
>g9282.t1 Gene=g9282 Length=1851
ATGGCTATGGCAAGGAGTTGTGGAAAATTAGGACCTTCAATGAAAATTTTCTTATTGAAT
AAGAATTTCCAATCAAACTTAAAATATCTGTCGACTGCATCAATTCTAAAGGCACCACTG
CATAAAACGGCAGCTGTCAATCAGCCACAAGTTGCTAAAGTCGGCAAAAAAGACTCGTTA
GATACTTCATTCAATAATCCTATTGATGCATTCAAGTCAAAGACAACTTTTGAGCTGATT
CGAGCCTATTTCGTGTATTTATTATGCTCTTCAGAATATTTAGTTGAAAACAACATGAAG
ATCATGAAATTGATGAATGCTGTTCTAGGTGACAAAATTTTTAATTTAATCATGAAGTCA
ACGTTTTATGGACATTTCGTAGCAGGCGAGAATCAAGAAAAAATCGTCCCATGTCTCGAA
AGATTAAGATCGTTTGGTGTCAAGCCAATTTTAGATTACTCAGTTGAGGAAGATTTATCG
CAAGAAGAAGCTGAAGAACGTGAAGTTTCAGCATCTGTTCCAACAGCTGCACCAGCACCA
TCTGATCCAGGTCATTTGCCGCAATATGTGGTCGATAAAACTTTTGCTGATCGACGCTAT
AAAGTTCTGGGAGCAAGAACATATTTTTATCTGAATGAAGCGACTTGCGAACGAAATATG
GAGACATTTATTCGCTGTTTGGAAGCTGTCAAATATAGCAGTTTCGGCACAGGCATTACA
GCCATCAAATTAACTGCACTTGGTCGTCCACACTTATTGCTACAAATCTCTGAAGTTATT
CAACGAACTCGTAATTATATGATAGAAATTGCAGGTGGAACAGGAAATGTTTTGACACAT
CATAAAACAATTAAAGATTTGGAAACATATTTCGGAACAATGGGTGATAATAAAGATGTC
AAGGATTTTTTAAAGCAAGTTACAACTGATAAGGAAGGAATATTGCATTTATTCCCATGG
AGTGGAATTATAAATGAAGAGCATCAATTGTCTGATACTTTCCGTGTTCCTGACCCAAAA
ACTGGTCAAATGCGTCGTTTGACATCACAAATACCACATAAAGAAGAAGAAATGTTTAGA
AATATGATACGTCGATTAAATAACATTGTACAAGTCGCTGAGGAATTAGACGTAAGAATC
ATGATTGATGCAGAACAGACATATTTTCAACCAGCTATTTCTCGAATTACATTAGAACTT
ATGAGAAAGTATAATACAAAGAAAGCAATTGTATTCAACACTTACCAATGCTATTTGAAA
GATGCTTATCGTGAAGTTTGTACTGATCTTGAACAAGCATCACGTCAGAACTTTTATTTT
GGTGCAAAATTAGTAAGAGGTGCATATATGGAACAAGAAAGAGCTCGTGCATCGGCTTTG
GGCTATGTAGATCCAATTAATCCAAATTATGAAGCAACAACTGAGATGTATCACAAGACT
TTGACAGAATGCTTGCGTAGAATCAAGAAATTAAAAGACAGTGGTGCTGATCCAAAAAAA
ATCGCTATAATGGTTGCATCGCACAATGAAGACACAGTTCGATTTGCTATTGAGAAAATG
AAAGAGATTGGCATTTCACCTGAAGATAAGGTCATTTGTTTCGGACAGTTATTAGGAATG
TGTGATTATATTACTATGCCATTAGGTCAAGCGGGATATTCTGCTTACAAATATGTTCCA
TACGGACCTGTTAAAGAAGTGCTGCCATATTTAAGTCGACGTGCACTCGAAAACAAAGGA
GTACTTAAAAAGATTCAGAAAGAAAAGAGATTATTAAAAACAGAAATTTGGCGGAGACTC
TCACGAGGACAACTATTTTATCGTCCAAAGGGTGATTATATACCAATTTAA
>g9282.t1 Gene=g9282 Length=616
MAMARSCGKLGPSMKIFLLNKNFQSNLKYLSTASILKAPLHKTAAVNQPQVAKVGKKDSL
DTSFNNPIDAFKSKTTFELIRAYFVYLLCSSEYLVENNMKIMKLMNAVLGDKIFNLIMKS
TFYGHFVAGENQEKIVPCLERLRSFGVKPILDYSVEEDLSQEEAEEREVSASVPTAAPAP
SDPGHLPQYVVDKTFADRRYKVLGARTYFYLNEATCERNMETFIRCLEAVKYSSFGTGIT
AIKLTALGRPHLLLQISEVIQRTRNYMIEIAGGTGNVLTHHKTIKDLETYFGTMGDNKDV
KDFLKQVTTDKEGILHLFPWSGIINEEHQLSDTFRVPDPKTGQMRRLTSQIPHKEEEMFR
NMIRRLNNIVQVAEELDVRIMIDAEQTYFQPAISRITLELMRKYNTKKAIVFNTYQCYLK
DAYREVCTDLEQASRQNFYFGAKLVRGAYMEQERARASALGYVDPINPNYEATTEMYHKT
LTECLRRIKKLKDSGADPKKIAIMVASHNEDTVRFAIEKMKEIGISPEDKVICFGQLLGM
CDYITMPLGQAGYSAYKYVPYGPVKEVLPYLSRRALENKGVLKKIQKEKRLLKTEIWRRL
SRGQLFYRPKGDYIPI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9282.t1 | Gene3D | G3DSA:3.20.20.220 | - | 343 | 603 | 0 |
| 2 | g9282.t1 | PANTHER | PTHR13914 | PROLINE OXIDASE | 46 | 604 | 0 |
| 3 | g9282.t1 | PANTHER | PTHR13914:SF22 | PROLINE DEHYDROGENASE 1, MITOCHONDRIAL | 46 | 604 | 0 |
| 1 | g9282.t1 | Pfam | PF01619 | Proline dehydrogenase | 140 | 585 | 0 |
| 4 | g9282.t1 | SUPERFAMILY | SSF51730 | FAD-linked oxidoreductase | 129 | 608 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006562 | proline catabolic process | BP |
| GO:0004657 | proline dehydrogenase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00318 (proline dehydrogenase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
