Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g9330.t1
  • List of isoforms

g9330.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00830

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g9330.t1) is OG0000091. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 0 none
Culicoides sonorensis CSONO 7 CSON014323-1, CSON005232-1, CSON001979-1, CSON014769-1, CSON010427-1, CSON003993-1, CSON009018-1
Polypedilum nubifer PNUBI 6 Pn.11578, Pn.11577, Pn.12227, Pn.11579, Pn.04297, Pn.10630
Polypedilum vanderplanki PVAND 10 g1688.t1, g8105.t1, g15191.t1, g15190.t1, g4724.t1, g4971.t1, g9415.t1, g9330.t1, g8133.t1, g4970.t1
Polypedilum pembai PPEMB 5 g7630.t1, g7313.t1, g5720.t1, g12252.t1, g10816.t1
Belgica antarctica BANTA 5 IU25_12778-mRNA-1, IU25_10088-mRNA-1, IU25_03828-mRNA-1, IU25_03406-mRNA-1, IU25_10826-mRNA-1
Clunio marinus CMARI 5 CRL03392.1, CRL03628.1, CRK88991.1, CRK87076.1, CRL02886.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL002031-PB, AAEL002005-PB, AAEL006827-PA, AAEL001960-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 7 EDS34542.1, EDS34538.1, EDS34543.1, EDS34537.1, EDS34541.1, EDS34539.1, EDS34540.1
Culex quinquefasciatus CQUIN 7 CPIJ010229-PA, CPIJ010230-PA, CPIJ010228-PA, CPIJ010227-PA, CPIJ010225-PA, CPIJ010226-PA, CPIJ010231-PA
Anopheles atroparvus AATRO 3 AATE006416-PA, AATE000448-PA, AATE002642-PA
Anopheles sinensis china ASINEC 3 ASIC002222-PA, ASIC002220-PA, ASIC002221-PA
Anopheles dirus ADIRU 1 ADIR011038-PA
Anopheles farauti AFARA 5 AFAF007302-PA, AFAF005933-PA, AFAF005364-PA, AFAF020093-PA, AFAF000981-PA
Anopheles epiroticus AEPIR 4 AEPI015122-PA, AEPI015121-PA, AEPI015120-PA, AEPI015119-PA
Anopheles christyi ACHRI 2 ACHR007169-PA, ACHR007028-PA
Anopheles merus AMERU 4 AMEM014992-PA, AMEM008043-PA, AMEM017268-PA, AMEM000211-PA
Anopheles melas AMELA 3 AMEC001292-PA, AMEC009726-PA, AMEC007699-PA
Anopheles arabiensis AARAB 4 AARA015657-PA, AARA015659-PA, AARA015656-PA, AARA015658-PA
Anopheles coluzzii ACOLU 3 ACOM030643-PA, ACOM030648-PA, ACOM030646-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON008019-PA, ACON008022-PA, ACON008018-PA, ACON012800-PA, ACON008020-PA
Anopheles gambiae AGAMB 5 AGAP008018-PA, AGAP012800-PA, AGAP008020-PA, AGAP008019-PA, AGAP008022-PA
Anopheles quadriannulatus AQUAD 4 AQUA016051-PA, AQUA016054-PA, AQUA016053-PA, AQUA016052-PA
Anopheles minimus AMINI 4 AMIN016141-PA, AMIN016135-PA, AMIN016136-PA, AMIN016134-PA
Anopheles culicifacies ACULI 4 ACUA008851-PA, ACUA018667-PA, ACUA019974-PA, ACUA025661-PA
Anopheles funestus AFUNE 4 AFUN015775-PA, AFUN015776-PA, AFUN015774-PA, AFUN015773-PA
Anopheles stephensi indian ASTEPI 2 ASTEI01782-PA, ASTEI01783-PA
Anopheles stephensi ASTEP 4 ASTE016017-PA, ASTE016016-PA, ASTE016014-PA, ASTE016015-PA
Anopheles albimanus AALBI 4 AALB015528-PA, AALB015531-PA, AALB015530-PA, AALB015529-PA
Anopheles darlingi ADARL 6 ADAC007790-PA, ADAC007789-PA, ADAC004477-PA, ADAC007791-PA, ADAC004476-PA, ADAC003280-PA
Drosophila willistoni DWILL 8 FBpp0378713, FBpp0374604, FBpp0251885, FBpp0251727, FBpp0239913, FBpp0379128, FBpp0253954, FBpp0249803
Drosophila pseudoobscura DPSEU 8 FBpp0282495, FBpp0276937, FBpp0334771, FBpp0278763, FBpp0272013, FBpp0274074, FBpp0283519, FBpp0283515
Drosophila persimilis DPERS 8 FBpp0184752, FBpp0187930, FBpp0187928, FBpp0187927, FBpp0187929, FBpp0174876, FBpp0186796, FBpp0187808
Drosophila ananassae DANAN 7 FBpp0347012, FBpp0119241, FBpp0119242, FBpp0115633, FBpp0120660, FBpp0347602, FBpp0119243
Drosophila melanogaster DMELA 7 FBpp0290498, FBpp0088437, FBpp0083145, FBpp0088436, FBpp0085792, FBpp0083144, FBpp0074858
Drosophila sechellia DSECH 7 FBpp0205361, FBpp0201952, FBpp0201953, FBpp0208301, FBpp0208300, FBpp0203391, FBpp0196402
Drosophila simulans DSIMU 7 FBpp0210733, FBpp0327639, FBpp0327301, FBpp0224347, FBpp0217674, FBpp0224346, FBpp0217675
Drosophila erecta DEREC 8 FBpp0140468, FBpp0136119, FBpp0131642, FBpp0141688, FBpp0371077, FBpp0141693, FBpp0365567, FBpp0134274
Drosophila yakuba DYAKU 7 FBpp0257007, FBpp0270593, FBpp0267070, FBpp0271047, FBpp0270594, FBpp0259765, FBpp0258066
Drosophila virilis DVIRI 6 FBpp0237951, FBpp0399167, FBpp0234709, FBpp0401393, FBpp0391640, FBpp0399647
Drosophila mojavensis DMOJA 5 FBpp0168437, FBpp0162219, FBpp0384023, FBpp0381630, FBpp0172773
Drosophila grimshawi DGRIM 7 FBpp0157561, FBpp0149302, FBpp0415124, FBpp0412666, FBpp0421372, FBpp0416516, FBpp0155990
Lucilia cuprina LCUPR 4 KNC25613, KNC20994, KNC25017, KNC23996
Musca domestica MDOME 13 MDOA000717-PA, MDOA016349-PA, MDOA005632-PB, MDOA006706-PA, MDOA013547-PA, MDOA005458-PA, MDOA006998-PA, MDOA002058-PA, MDOA012445-PA, MDOA010536-PB, MDOA004116-PA, MDOA005734-PA, MDOA003057-PA
Stomoxys calcitrans SCALC 17 SCAU011237-PA, SCAU007393-PA, SCAU014597-PA, SCAU002344-PA, SCAU016495-PA, SCAU014171-PA, SCAU013789-PA, SCAU009420-PA, SCAU003418-PA, SCAU000964-PA, SCAU009369-PA, SCAU001389-PA, SCAU002181-PA, SCAU008489-PA, SCAU009551-PA, SCAU001178-PA, SCAU000862-PA
Glossina brevipalpis GBREV 5 GBRI003926-PA, GBRI000067-PA, GBRI000080-PA, GBRI000069-PA, GBRI003925-PA
Glossina palpalis GPALP 3 GPPI001833-PA, GPPI029034-PA, GPPI029033-PA
Glossina austeni GAUST 4 GAUT012879-PA, GAUT021416-PA, GAUT021412-PA, GAUT021413-PA
Glossina pallidipes GPALL 4 GPAI001437-PA, GPAI044237-PA, GPAI044236-PA, GPAI036735-PA
Glossina morsitans GMORS 2 GMOY004338-PA, GMOY007270-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g9330.t1) is OG0000243. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN821_c3_g1_i2.p1, TRINITY_DN36482_c0_g1_i1.p1, TRINITY_DN821_c0_g1_i2.p1, TRINITY_DN4737_c0_g1_i4.p1, TRINITY_DN36480_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG08155, PSG10417, PSG00269
Trissopelopia nemorum TNEMO TRINITY_DN3900_c0_g1_i17.p1, TRINITY_DN1819_c0_g1_i16.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN5553_c0_g1_i8.p1, TRINITY_DN5754_c0_g1_i8.p1, TRINITY_DN6781_c0_g1_i3.p1
Telmatogeton pecinata TPECI TRINITY_DN5594_c0_g1_i4.p1, TRINITY_DN2842_c0_g1_i4.p1, TRINITY_DN4140_c0_g1_i7.p1
Cricotopus draysoni CDRAY TRINITY_DN285_c0_g1_i4.p1, TRINITY_DN576_c0_g1_i1.p1, TRINITY_DN14403_c0_g1_i1.p1, TRINITY_DN15340_c0_g1_i1.p1, TRINITY_DN13711_c0_g1_i3.p1
Clunio marinus CMARI CRL03392.1, CRL03628.1, CRK88991.1, CRK87076.1, CRL02886.1
Cardiocladius sp CARDI TRINITY_DN6813_c0_g2_i12.p1, TRINITY_DN13118_c0_g1_i2.p1, TRINITY_DN4487_c0_g1_i8.p1
Belgica antarctica BANTA IU25_12778-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN285841_c0_g1_i1.p1, TRINITY_DN5946_c0_g1_i11.p1, TRINITY_DN250778_c0_g1_i1.p2, TRINITY_DN26114_c0_g1_i13.p1, TRINITY_DN180886_c0_g1_i2.p1, TRINITY_DN6756_c0_g2_i3.p1, TRINITY_DN39502_c0_g1_i2.p1, TRINITY_DN9097_c0_g1_i5.p1, TRINITY_DN273804_c0_g1_i1.p1, TRINITY_DN4955_c0_g1_i8.p1, TRINITY_DN4800_c0_g1_i9.p1, TRINITY_DN4955_c1_g1_i1.p2, TRINITY_DN26114_c0_g2_i1.p1
Chironomus riparius CRIPA g9348.t1, g5130.t1, g10155.t1, g9872.t1, g9347.t1, g2969.t1
Chironomus columbiensis CCOLU TRINITY_DN4304_c0_g1_i3.p1, TRINITY_DN13091_c0_g1_i1.p1, TRINITY_DN11233_c1_g1_i1.p1, TRINITY_DN6607_c0_g1_i7.p1, TRINITY_DN53746_c0_g1_i1.p2, TRINITY_DN1373_c0_g1_i13.p1, TRINITY_DN11233_c0_g1_i1.p1, TRINITY_DN14018_c0_g1_i1.p1
Chironomus tentans CTENT g5800.t1, g3990.t1, g5799.t1, g3632.t1, g5808.t1
Chironomus dilutus CDILU TRINITY_DN42635_c0_g1_i1.p1, TRINITY_DN3687_c0_g2_i2.p1, TRINITY_DN3687_c0_g1_i5.p1, TRINITY_DN36518_c0_g1_i1.p1, TRINITY_DN3229_c0_g1_i13.p1
Polypedilum nubifer PNUBI Pn.11578, Pn.11577, Pn.12227, Pn.11579, Pn.04297, Pn.10630
Polypedilum vanderplanki PVAND g1688.t1, g8105.t1, g15189.t1, g15191.t1, g15190.t1, g4724.t1, g4971.t1, g9415.t1, g9330.t1, g8133.t1, g4970.t1
Polypedilum pembai PPEMB g7630.t1, g7313.t1, g5720.t1, g12252.t1, g10816.t1
Culicoides sonorensis CSONO CSON014323-1, CSON001979-1, CSON014769-1, CSON003993-1, CSON009018-1
Aedes aegypti lvpagwg AAEGYL AAEL002031-PB, AAEL002005-PB, AAEL006827-PA, AAEL001960-PA
Anopheles gambiae AGAMB AGAP008018-PA, AGAP012800-PA, AGAP008020-PA, AGAP008019-PA, AGAP008022-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation