General information for g9355.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine protease snake.
Parent gene
- The parent gene g9355 is located on chr_1: 2201709..2205164 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9355 | g9355.t1 | isoform | g9355.t1 | 2201709 | 2205164 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon1 | 2201709 | 2201808 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS1 | 2201709 | 2201808 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon2 | 2202643 | 2202800 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS2 | 2202643 | 2202800 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon3 | 2202898 | 2202982 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS3 | 2202898 | 2202982 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon4 | 2203594 | 2203872 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS4 | 2203594 | 2203872 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon5 | 2204402 | 2204481 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS5 | 2204402 | 2204481 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon6 | 2204571 | 2204639 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS6 | 2204571 | 2204639 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon7 | 2204787 | 2204798 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS7 | 2204787 | 2204798 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon8 | 2204863 | 2204872 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS8 | 2204863 | 2204872 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon9 | 2204944 | 2204957 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS9 | 2204944 | 2204957 |
| chr_1 | g9355 | g9355.t1 | exon | g9355.t1.exon10 | 2205018 | 2205164 |
| chr_1 | g9355 | g9355.t1 | cds | g9355.t1.CDS10 | 2205018 | 2205164 |
| chr_1 | g9355 | g9355.t1 | TSS | g9355.t1 | NA | NA |
| chr_1 | g9355 | g9355.t1 | TTS | g9355.t1 | NA | NA |
Sequences
>g9355.t1 Gene=g9355 Length=954
ATGATTCTGTGTTTATGGAATCTGACTTTTCAATTATTGCTAACAGTCGGCAATTTGCTA
CTGAAGAATTGTGATGCTGTTGGAGAGATTGCTTGTGAAAAATGTCAAGAGTATTCAAAG
TACGTATATGTGGATGAAGCAAGTCCTGTACTATCAGCTTCATATTCAGAATTGGATTCA
ATATCGAAATGTGGAATTGTAGAGACGCCATTAATCGTTGGCGGGCAACGAGTCAATGAA
ATTGAATTTCCTCATATGGCTGCCATCGGCTATAAATCGAATGAGGAAAATATTTCGTTC
AAATGTGGAGGCTCTCTTATATCTGAGCTTTACATTCTCACAGCTGCACATTGTGAATTG
GTCCATGAATATGGACCGCCTGTAGCTGTTAAGCTGGGAATAATTTATATTCATGATAGT
GGTCCGAATGCACAACTTATCGACATTGAGTCCTTTATCTCGCATCCGCAGTATCAGAGT
GCTGAGAAATATTTCGACATCGCGCTCATCAAATTAAAGTCATTTGTTAAATTTGATGAG
TATGTCAGGCCAGCGTGCGTTTGTCAACTAACGAGTGAATGGAACAAGGCTATCGCAGTA
GGCTTTGGAAAAACACAATATGAAAACGATAAAGGGAGTCCGCATCTTATGAAAGTCTTG
CTGAGTTATGTCGATAGAGCCACTTGCGTAGCAACTTATCAGTCTTATAAGCTGCTTAAA
AATGGAATAATTGATTCACAATTTTGTGCTGGTGAGAGAAAAGGAAATAAGGATTCTTGT
CAGGGTGACAGTGGTGGACCACTTCAGATTGTCATGTCAGAGCCATATTGCATGTACAAT
ATCATCGGAATTACATCGTTTGGAAAATTTTGTGGATTTGCTAACTCATATGGAGTTTAT
ACGAATGTAACGAGTTTTATTGATTTCATTGAAAGTATTGTATGGACTGAATAA
>g9355.t1 Gene=g9355 Length=317
MILCLWNLTFQLLLTVGNLLLKNCDAVGEIACEKCQEYSKYVYVDEASPVLSASYSELDS
ISKCGIVETPLIVGGQRVNEIEFPHMAAIGYKSNEENISFKCGGSLISELYILTAAHCEL
VHEYGPPVAVKLGIIYIHDSGPNAQLIDIESFISHPQYQSAEKYFDIALIKLKSFVKFDE
YVRPACVCQLTSEWNKAIAVGFGKTQYENDKGSPHLMKVLLSYVDRATCVATYQSYKLLK
NGIIDSQFCAGERKGNKDSCQGDSGGPLQIVMSEPYCMYNIIGITSFGKFCGFANSYGVY
TNVTSFIDFIESIVWTE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g9355.t1 | CDD | cd00190 | Tryp_SPc | 72 | 313 | 5.65024E-70 |
| 9 | g9355.t1 | Gene3D | G3DSA:2.40.10.10 | - | 63 | 314 | 2.5E-66 |
| 2 | g9355.t1 | PANTHER | PTHR24260 | - | 29 | 316 | 1.6E-70 |
| 3 | g9355.t1 | PANTHER | PTHR24260:SF91 | FI18411P1-RELATED | 29 | 316 | 1.6E-70 |
| 4 | g9355.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 103 | 118 | 1.5E-13 |
| 6 | g9355.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 162 | 176 | 1.5E-13 |
| 5 | g9355.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 257 | 269 | 1.5E-13 |
| 1 | g9355.t1 | Pfam | PF00089 | Trypsin | 72 | 310 | 1.1E-50 |
| 11 | g9355.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 26 | - |
| 12 | g9355.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 13 | g9355.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 14 | - |
| 14 | g9355.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 26 | - |
| 10 | g9355.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 317 | - |
| 17 | g9355.t1 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 113 | 118 | - |
| 18 | g9355.t1 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 258 | 269 | - |
| 19 | g9355.t1 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 72 | 315 | 27.12 |
| 16 | g9355.t1 | SMART | SM00020 | trypsin_2 | 71 | 310 | 2.8E-63 |
| 7 | g9355.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 56 | 315 | 2.91E-70 |
| 8 | g9355.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed