Gene loci information

Transcript annotation

  • This transcript has been annotated as Deoxyuridine 5’-triphosphate nucleotidohydrolase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9374 g9374.t5 TTS g9374.t5 2292516 2292516
chr_1 g9374 g9374.t5 isoform g9374.t5 2292602 2293126
chr_1 g9374 g9374.t5 exon g9374.t5.exon1 2292602 2292932
chr_1 g9374 g9374.t5 cds g9374.t5.CDS1 2292602 2292932
chr_1 g9374 g9374.t5 exon g9374.t5.exon2 2292996 2293126
chr_1 g9374 g9374.t5 cds g9374.t5.CDS2 2292996 2293126
chr_1 g9374 g9374.t5 TSS g9374.t5 2293210 2293210

Sequences

>g9374.t5 Gene=g9374 Length=462
ATGCCAGCTGATAATCAAACACAAGTCAAAATGATTGAGCCGACACAGATTTTGCGTTTT
GCCAAATTGACAGATCATGCTTTTGCACCAATAAAAGCATCGGAAAAAGCAGCTGGGTTT
GATTTGAAAAGTTGCATTGTTCCTGCTCATGGTAAGCAAATTGTCAAGACAGATATTCAA
ATTGAACTTCCTTCTGGATGTTATGGAAGAATTGCTCCACGTTCGGGCTTAGCAGCTAAA
AATTTCATTGATATTGGAGCTGGTGTTGTTGACGAAGATTACCGAGGAAATATAGGAGTT
GTCATGTTCAATCATAGTGATGTGGATTTTCATATTGCTAAAGGAGATCGAATTGCACAA
TTAATTTGTGAAAGAATCTTTTATCCACAATTAGAAGAGTGCTCTTCATTGACCGAAACA
CAACGTGGCGAAGGAGGTTTTGGAAGTACTGGAACAAACTAA

>g9374.t5 Gene=g9374 Length=153
MPADNQTQVKMIEPTQILRFAKLTDHAFAPIKASEKAAGFDLKSCIVPAHGKQIVKTDIQ
IELPSGCYGRIAPRSGLAAKNFIDIGAGVVDEDYRGNIGVVMFNHSDVDFHIAKGDRIAQ
LICERIFYPQLEECSSLTETQRGEGGFGSTGTN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g9374.t5 CDD cd07557 trimeric_dUTPase 38 122 0
4 g9374.t5 Gene3D G3DSA:2.70.40.10 - 14 152 0
2 g9374.t5 PANTHER PTHR11241 DEOXYURIDINE 5’-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 8 151 0
1 g9374.t5 Pfam PF00692 dUTPase 29 151 0
3 g9374.t5 SUPERFAMILY SSF51283 dUTPase-like 15 152 0
5 g9374.t5 TIGRFAM TIGR00576 dut: dUTP diphosphatase 18 151 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0046081 dUTP catabolic process BP
GO:0006226 dUMP biosynthetic process BP
GO:0004170 dUTP diphosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed