General information for g9376.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9376 is located on chr_1: 2300541..2301045 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9376 | g9376.t7 | TTS | g9376.t7 | 2299024 | 2299024 |
| chr_1 | g9376 | g9376.t7 | isoform | g9376.t7 | 2299164 | 2301045 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon1 | 2299164 | 2299415 |
| chr_1 | g9376 | g9376.t7 | cds | g9376.t7.CDS1 | 2299164 | 2299415 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon2 | 2299474 | 2299598 |
| chr_1 | g9376 | g9376.t7 | cds | g9376.t7.CDS2 | 2299474 | 2299598 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon3 | 2299721 | 2299760 |
| chr_1 | g9376 | g9376.t7 | cds | g9376.t7.CDS3 | 2299721 | 2299760 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon4 | 2299842 | 2300046 |
| chr_1 | g9376 | g9376.t7 | cds | g9376.t7.CDS4 | 2299842 | 2300046 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon5 | 2300115 | 2300365 |
| chr_1 | g9376 | g9376.t7 | cds | g9376.t7.CDS5 | 2300115 | 2300146 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon6 | 2300437 | 2300745 |
| chr_1 | g9376 | g9376.t7 | exon | g9376.t7.exon7 | 2300964 | 2301045 |
| chr_1 | g9376 | g9376.t7 | TSS | g9376.t7 | 2301161 | 2301161 |
Sequences
>g9376.t7 Gene=g9376 Length=1264
ATGTTAAAAACTGCAGCTCCCGACAATAACAAGGATACATTGCTTGAAAAATCAATGATA
CCCATCATTGATGTTTCATTTGGCACGGAAGAAATTCCTCAGAAATCGGTTGTAAATCGT
ATCGCTACACAGATAACAAAAGCCTTTAGAGAGAAGGGTATGGCTTTGTTAGTAAATCAT
GGCATCACAGAAGAAAAGGTCTCAAATTAGTCATACATTATAATCACGCTCGAAATACCT
TATTTACTCACACCTTTTCTTTTTCTTTTAATAATGCGAAATACAGTTGAAAATTGCGTA
CAATTATTTCGATGAATTTTGCAAACTTCCCGAAGACACGAAAAATATCTATTTGAGAAA
AAGTGAAACTGGAAATGGTGGCTATGTAAAGCCTAATCAAGAAAGTTTCGAAAAAGGGAA
AAAGGAAATTCGTCATGCTTTTAATATTTGCACACTTGATGCAAAATTGCCTGACGATCC
ATTGCCAGGTTTTAAAAAACATATTAGTGAACTTGCAAAAGATTTCAAAAACATCACTAG
TTTGCTATTACAAGCACTTGCAATTGGCTTAGAGCTTCCAGCCAATTTCTTTGTAGAAAA
ACACTCACACATGCTTGATTGCGATAACGAAACAACATTTCGATTGCTCTATTATCCACC
ATTGGTTATTGATGATGATAAAAATGAAAATTTCACTAAAGGATCTTCAACATATTGCCA
TCAAAAAACCAAATTTGATGAATCGAAATTGGGTTCACTCGACATGAAGGATAAAGAAAA
TGATCAAGAGGAAACACATATTAAAAAAGAGGAAGTTCAAAATTTCACTCGATGTGGAGC
TCATTGTGATTATGGAACATTTACTCTATTGATTCAAGACGTCGAGGGTGGACTTGAAGT
TAAATTGCCAAATAGTGAAAAGTGGCAAAGGGTAGGTCATCTTGGTGGTGCCATTTTTGC
GAATGTTGGTGAACTTTTGTCAATATGGACTAATGGAGCTTATCCTGCCTTAAACCATCG
AGTTGTTATTCCTGAAAATTCAATAGCAACCACAAAGGGTCGACATGCAATTGCCTATTT
TGTTCATCCTGATAATTTAACTCCAATTGTGCCTATGGATGTTTCGCCACCATCGTCTTC
TCAAGAAGCAATAAATGAGAAGAAAGAAAAGACAAGGAAAAAGTCATTTAAAGCGGCAAA
AATGAAAATTTACAACGCATATCAACATGTTCAGAGAAGATTTAAAGAAACTTATGCATC
ATAA
>g9376.t7 Gene=g9376 Length=217
MLDCDNETTFRLLYYPPLVIDDDKNENFTKGSSTYCHQKTKFDESKLGSLDMKDKENDQE
ETHIKKEEVQNFTRCGAHCDYGTFTLLIQDVEGGLEVKLPNSEKWQRVGHLGGAIFANVG
ELLSIWTNGAYPALNHRVVIPENSIATTKGRHAIAYFVHPDNLTPIVPMDVSPPSSSQEA
INEKKEKTRKKSFKAAKMKIYNAYQHVQRRFKETYAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9376.t7 | Gene3D | G3DSA:2.60.120.330 | - | 33 | 217 | 1.2E-33 |
| 5 | g9376.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 191 | - |
| 2 | g9376.t7 | PANTHER | PTHR47990:SF134 | CHROMOSOME 16, WHOLE GENOME SHOTGUN SEQUENCE | 73 | 214 | 1.9E-17 |
| 3 | g9376.t7 | PANTHER | PTHR47990 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 73 | 214 | 1.9E-17 |
| 1 | g9376.t7 | Pfam | PF03171 | 2OG-Fe(II) oxygenase superfamily | 11 | 160 | 9.4E-16 |
| 4 | g9376.t7 | SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 4 | 215 | 2.75E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
