General information for g9376.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9376 is located on chr_1: 2300541..2301045 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9376 | g9376.t8 | TTS | g9376.t8 | 2299024 | 2299024 |
| chr_1 | g9376 | g9376.t8 | isoform | g9376.t8 | 2299164 | 2301045 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon1 | 2299164 | 2299415 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS1 | 2299164 | 2299415 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon2 | 2299474 | 2299598 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS2 | 2299474 | 2299598 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon3 | 2299721 | 2299760 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS3 | 2299721 | 2299760 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon4 | 2299842 | 2300046 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS4 | 2299842 | 2300046 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon5 | 2300115 | 2300365 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS5 | 2300115 | 2300365 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon6 | 2300437 | 2300541 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS6 | 2300437 | 2300541 |
| chr_1 | g9376 | g9376.t8 | exon | g9376.t8.exon7 | 2300630 | 2301045 |
| chr_1 | g9376 | g9376.t8 | cds | g9376.t8.CDS7 | 2300630 | 2300767 |
| chr_1 | g9376 | g9376.t8 | TSS | g9376.t8 | 2301161 | 2301161 |
Sequences
>g9376.t8 Gene=g9376 Length=1394
ATGTTAAAAACTGCAGCTCCCGACAATAACAAGGATACATTGCTTGAAAAATCAATGATA
CCCATCATTGATGTTTCATTTGGTAAGATAAAAGCATAAATAAATAAAATTCCCATAATG
ATTCACTCATTTAATTATCAAAATGAAGTAATTTCTAGATTGGTAATGATAATGAAATAA
AAGTATGACTCTCTTTGTCAATCATGACTTTTTGTACTTCTTTCGTGCATGAGTGATATC
TTTGTATATAATTAACCTTGAATACATTCTTATTAACGATGACATTCATTCAAAAAACAG
GCACGGAAGAAATTCCTCAGAAATCGGTTGTAAATCGTATCGCTACACAGATAACAAAAG
CCTTTAGAGAGAAGGGTATGGCTTTGTTAGTAAATCATGGCATCACAGAAGAAAAGTTGA
AAATTGCGTACAATTATTTCGATGAATTTTGCAAACTTCCCGAAGACACGAAAAATATCT
ATTTGAGAAAAAGTGAAACTGGAAATGGTGGCTATGTAAAGCCTAATCAAGAAAGTTTCG
AAAAAGGGAAAAAGGAAATTCGTCATGCTTTTAATATTTGCACACTTGATGCAAAATTGC
CTGACGATCCATTGCCAGGTTTTAAAAAACATATTAGTGAACTTGCAAAAGATTTCAAAA
ACATCACTAGTTTGCTATTACAAGCACTTGCAATTGGCTTAGAGCTTCCAGCCAATTTCT
TTGTAGAAAAACACTCACACATGCTTGATTGCGATAACGAAACAACATTTCGATTGCTCT
ATTATCCACCATTGGTTATTGATGATGATAAAAATGAAAATTTCACTAAAGGATCTTCAA
CATATTGCCATCAAAAAACCAAATTTGATGAATCGAAATTGGGTTCACTCGACATGAAGG
ATAAAGAAAATGATCAAGAGGAAACACATATTAAAAAAGAGGAAGTTCAAAATTTCACTC
GATGTGGAGCTCATTGTGATTATGGAACATTTACTCTATTGATTCAAGACGTCGAGGGTG
GACTTGAAGTTAAATTGCCAAATAGTGAAAAGTGGCAAAGGGTAGGTCATCTTGGTGGTG
CCATTTTTGCGAATGTTGGTGAACTTTTGTCAATATGGACTAATGGAGCTTATCCTGCCT
TAAACCATCGAGTTGTTATTCCTGAAAATTCAATAGCAACCACAAAGGGTCGACATGCAA
TTGCCTATTTTGTTCATCCTGATAATTTAACTCCAATTGTGCCTATGGATGTTTCGCCAC
CATCGTCTTCTCAAGAAGCAATAAATGAGAAGAAAGAAAAGACAAGGAAAAAGTCATTTA
AAGCGGCAAAAATGAAAATTTACAACGCATATCAACATGTTCAGAGAAGATTTAAAGAAA
CTTATGCATCATAA
>g9376.t8 Gene=g9376 Length=371
MTFIQKTGTEEIPQKSVVNRIATQITKAFREKGMALLVNHGITEEKLKIAYNYFDEFCKL
PEDTKNIYLRKSETGNGGYVKPNQESFEKGKKEIRHAFNICTLDAKLPDDPLPGFKKHIS
ELAKDFKNITSLLLQALAIGLELPANFFVEKHSHMLDCDNETTFRLLYYPPLVIDDDKNE
NFTKGSSTYCHQKTKFDESKLGSLDMKDKENDQEETHIKKEEVQNFTRCGAHCDYGTFTL
LIQDVEGGLEVKLPNSEKWQRVGHLGGAIFANVGELLSIWTNGAYPALNHRVVIPENSIA
TTKGRHAIAYFVHPDNLTPIVPMDVSPPSSSQEAINEKKEKTRKKSFKAAKMKIYNAYQH
VQRRFKETYAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9376.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 345 | - |
| 4 | g9376.t8 | PANTHER | PTHR47990:SF34 | IRON/ASCORBATE OXIDOREDUCTASE DDB_G0283291-RELATED | 18 | 192 | 1.8E-29 |
| 6 | g9376.t8 | PANTHER | PTHR47990 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 18 | 192 | 1.8E-29 |
| 3 | g9376.t8 | PANTHER | PTHR47990:SF34 | IRON/ASCORBATE OXIDOREDUCTASE DDB_G0283291-RELATED | 219 | 361 | 1.8E-29 |
| 5 | g9376.t8 | PANTHER | PTHR47990 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 219 | 361 | 1.8E-29 |
| 1 | g9376.t8 | Pfam | PF14226 | non-haem dioxygenase in morphine synthesis N-terminal | 19 | 105 | 2.0E-13 |
| 2 | g9376.t8 | Pfam | PF03171 | 2OG-Fe(II) oxygenase superfamily | 165 | 314 | 3.8E-15 |
| 7 | g9376.t8 | SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 15 | 369 | 2.54E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05282 (gibberellin-44 dioxygenase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
