General information for g939.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pancreatic triacylglycerol lipase.
Parent gene
- The parent gene g939 is located on chr_3: 6980957..6981749 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g939 | g939.t1 | isoform | g939.t1 | 6980957 | 6981749 |
| chr_3 | g939 | g939.t1 | exon | g939.t1.exon1 | 6980957 | 6981183 |
| chr_3 | g939 | g939.t1 | cds | g939.t1.CDS1 | 6980957 | 6981183 |
| chr_3 | g939 | g939.t1 | exon | g939.t1.exon2 | 6981434 | 6981648 |
| chr_3 | g939 | g939.t1 | cds | g939.t1.CDS2 | 6981434 | 6981648 |
| chr_3 | g939 | g939.t1 | exon | g939.t1.exon3 | 6981721 | 6981749 |
| chr_3 | g939 | g939.t1 | cds | g939.t1.CDS3 | 6981721 | 6981749 |
| chr_3 | g939 | g939.t1 | TSS | g939.t1 | NA | NA |
| chr_3 | g939 | g939.t1 | TTS | g939.t1 | NA | NA |
Sequences
>g939.t1 Gene=g939 Length=471
ATGTTCCTGGTATTGGAAGTAATAACTGGATTGGATCCTGCAGAACCCATGTTTCAATCA
ATGCTGAATTTGTTAGTAGACTTGACCAAGTTGATGCACAAATTTGTTGATGTGATTCAT
ACTGATGCTAGAAGTCTTTTTCTACGTAGAATACCAGGCTATGGAATGTCTCAAGCATGT
GGCCATTTAGATTTTTATCCAAACAATGGAAAAGAAATGCCAGGCTGTTCATTATCTCAA
GAGAGAAATTGTGCATTGATGGGTTATCATGCTCAAATGCCTTATTCCTATTCTCAATAT
AATTCTTCAGAAAATGATGTCATTCCATCAGAAAGTTCCACCGATTGCTCAGTGCAGGGA
TATTATATTTTGACAACTGGCAAAGATCCCCATTATTGTCAACGTCATTATCGATTTATA
ATTGAACTCGCAAAACCAGTTATGGCTGAAAAATGGGGCAAGGATTTTTGA
>g939.t1 Gene=g939 Length=156
MFLVLEVITGLDPAEPMFQSMLNLLVDLTKLMHKFVDVIHTDARSLFLRRIPGYGMSQAC
GHLDFYPNNGKEMPGCSLSQERNCALMGYHAQMPYSYSQYNSSENDVIPSESSTDCSVQG
YYILTTGKDPHYCQRHYRFIIELAKPVMAEKWGKDF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g939.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 3 | 143 | 0 |
| 2 | g939.t1 | PANTHER | PTHR11610 | LIPASE | 5 | 84 | 0 |
| 3 | g939.t1 | PANTHER | PTHR11610:SF161 | MIP10846P1-RELATED | 5 | 84 | 0 |
| 1 | g939.t1 | Pfam | PF00151 | Lipase | 7 | 81 | 0 |
| 4 | g939.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 8 | 100 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
