General information for g9426.t47
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycosylphosphatidylinositol anchor attachment 1 protein.
Parent gene
- The parent gene g9426 is located on chr_1: 2858247..2859684 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9426 | g9426.t47 | TTS | g9426.t47 | 2857563 | 2857563 |
| chr_1 | g9426 | g9426.t47 | isoform | g9426.t47 | 2858247 | 2859416 |
| chr_1 | g9426 | g9426.t47 | exon | g9426.t47.exon1 | 2858247 | 2859416 |
| chr_1 | g9426 | g9426.t47 | cds | g9426.t47.CDS1 | 2858248 | 2859393 |
| chr_1 | g9426 | g9426.t47 | TSS | g9426.t47 | 2859753 | 2859753 |
Sequences
>g9426.t47 Gene=g9426 Length=1170
GTCTTGTATTATCAGAATTAAAAATGGACAGTGTCAATTTGGCAAAAACTTATTTAAATG
AATTAGAACATGAGAGAACAAGTCACAAATCAAACATTCCTTACCCATGGATGCAAGCAA
AAATGAAGCAAATCGGATTAAAAACTTACATTCACAATTTCACACTCAATTATCCTTTTG
GAGGAGGTAAAAGGTTTGAAGGAAAAAATATTTATGGAATTTTGAGAGGTCCTCGTATCG
GTGCAACTGAATCAATTGTCATCAGTGTTCCTTATCGTCCACCAAACACAGCTCATACTT
CTATCACTGCTAGCGTTCCCTTGATTTTGGCATTTGCAGACTTTGCTAGAAGGCAAAAGT
ATTGGTCAAAAGATATTATTTTCCTTGTTACTGATCAAGAACAATTAGGCATGCAAGCAT
TTCTAGAGGCATATTATGGTGAAGATGAAAATAATATTCTTGATTCTGGAACTCTTTATG
GAAAAGCTGGAAGTATAGTTGCAGCCATAAATATGGAAATTCAAGATTTTGATGTAGATT
TTAATAGTTTAAAAATTGAAGGACTTAATGGTCAACTGCCTAATTTAGATTTGCATAATC
TTGTTGTGAAACTTTCACATAAAAATGGCATTCCAATTGGCTACAAAACAAAAATGAGTG
AGCATCCTCGTGACGATGTGATTGCAAATTTCTTCAGTTTACTCTCAATGATGTGGACAC
AATCGAGTGGTGTACCAAATGGAAATCACGGATTATTTCATAAATATGGCATTGAAGCAC
TTACAATTGAAGCTGTTAAAAGAGAGACAAGTGTGAAAAACAATAATGTTCATCATAAAA
TTATGGCATTGTTAAAAATCATTGAAGGCATCAGTCGATCTCTAAACAATCTTTTGGAAA
GATTTCATCAAAGTTTCTTCTTTTATGTGATTGTATCCGCTGATCGTTTCATTTCGATTG
GTGATTACATGCCTAGTGTTGGTTTAATGTCTGCAAGTTTGCTTATCAAATCTTTTCTCT
TATGGCTTATTGCAAATAACAAAAATGAAGATGATGAACAAGAAAATGAAAATAAGGAAG
AAGAGGACAAAATTGTAATCGTAAGAAAATCAAAAACAACCATTGACTACATTAAAATAG
GAACAATTATCTTATGTTCGCATATTGTTG
>g9426.t47 Gene=g9426 Length=382
MDSVNLAKTYLNELEHERTSHKSNIPYPWMQAKMKQIGLKTYIHNFTLNYPFGGGKRFEG
KNIYGILRGPRIGATESIVISVPYRPPNTAHTSITASVPLILAFADFARRQKYWSKDIIF
LVTDQEQLGMQAFLEAYYGEDENNILDSGTLYGKAGSIVAAINMEIQDFDVDFNSLKIEG
LNGQLPNLDLHNLVVKLSHKNGIPIGYKTKMSEHPRDDVIANFFSLLSMMWTQSSGVPNG
NHGLFHKYGIEALTIEAVKRETSVKNNNVHHKIMALLKIIEGISRSLNNLLERFHQSFFF
YVIVSADRFISIGDYMPSVGLMSASLLIKSFLLWLIANNKNEDDEQENENKEEEDKIVIV
RKSKTTIDYIKIGTIILCSHIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9426.t47 | Coils | Coil | Coil | 336 | 356 | - |
| 4 | g9426.t47 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 8 | 289 | 7.1E-6 |
| 2 | g9426.t47 | PANTHER | PTHR13304 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN | 5 | 352 | 1.7E-101 |
| 9 | g9426.t47 | PIRSF | PIRSF036762 | GAA1 | 1 | 381 | 3.2E-123 |
| 1 | g9426.t47 | Pfam | PF04114 | Gaa1-like, GPI transamidase component | 59 | 381 | 2.6E-114 |
| 7 | g9426.t47 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 314 | - |
| 8 | g9426.t47 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 315 | 337 | - |
| 6 | g9426.t47 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 338 | 382 | - |
| 3 | g9426.t47 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 28 | 274 | 3.45E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | CC |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
