General information for g9479.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acid synthase.
Parent gene
- The parent gene g9479 is located on chr_1: 3520808..3528375 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9479 | g9479.t1 | isoform | g9479.t1 | 3520808 | 3528375 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon1 | 3520808 | 3521229 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS1 | 3520808 | 3521229 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon2 | 3521286 | 3521887 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS2 | 3521286 | 3521887 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon3 | 3521943 | 3522125 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS3 | 3521943 | 3522125 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon4 | 3522186 | 3522203 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS4 | 3522186 | 3522203 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon5 | 3522349 | 3523576 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS5 | 3522349 | 3523576 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon6 | 3523634 | 3523863 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS6 | 3523634 | 3523863 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon7 | 3523925 | 3526239 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS7 | 3523925 | 3526239 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon8 | 3526298 | 3526647 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS8 | 3526298 | 3526647 |
| chr_1 | g9479 | g9479.t1 | exon | g9479.t1.exon9 | 3526701 | 3528375 |
| chr_1 | g9479 | g9479.t1 | cds | g9479.t1.CDS9 | 3526701 | 3528375 |
| chr_1 | g9479 | g9479.t1 | TSS | g9479.t1 | NA | NA |
| chr_1 | g9479 | g9479.t1 | TTS | g9479.t1 | NA | NA |
Sequences
>g9479.t1 Gene=g9479 Length=7023
ATGTCAAAAATAAAAGAAATTGGTGATGATGTCGTTATATCGGGGGTGTCAGGTCGATTT
CCTAATTCACGCAATATGCATGAATTTGCTGAAAATCTCTACAATAAAATTGATATGGTA
GATGAAGAAGAAAAGCGTTGGAAGCATGTGAATCCAGAATGTCCTAAAAGAATGGGAAAA
ATCGATGACATTGAAAAGTTTGATGCGTCATTTTTCGGTGTTAGTTATAGACAAGCAAGA
ACAATGGATCCACAATGCAGAATGATGCTCGAACATGCATATGAAGCTGTGATTGATAGT
GGGATGTGTCCAAAACAACTTAGAGGGACGAAAACAGGTGTTTTCATAGGCATGAGCTAT
AATGAATCAGAGAAAAAGTGGATTTATGAAAATATATCAAAGGAAGGGCTTGGTATTACT
GGCTCAGCAAAAGCTCTAGTTGCTAATCGAGTGTCATTTGTACTCGGCACAACAGGTCCA
AGTTTTGTTCTCGACACAGCATGTAGTTCATCAATGTACGCTCTCGATATTGCTTATAAA
ATGATTTCATCGGGTGAATGTGATGCAGCAATTGTCGGTGGTACAAACCTTTGTCTTCAT
CCACATTTAAGCTATCAATTTGTCAAATTAGGTGTTGTTTCAAAAGATGGCTATTGTCGA
CCATTTGATAAAGATGCAAGCGGTTTTACAAGAGCTGAAACAAATTGTGTGCTATTTTTA
CAAAGAAGAATTGATGCCAAACGAGTTTATGCAACTGTTTTACATTCAAAAACTAATTGT
GATGGTTTCAAAGAAGAAGGCATAAATTTTCCTAGCAGTAAGAGACAAGCTCAATTATTG
ACTGAATTCTATGATGAAGTTGGTATACCACCGAATGACCCAGAAATTGGATATTTTGAA
GCTCATTGCACTGGAACGAAAGTTGGTGATGCAGAAGAATGTAAAGCGATTGATGAAGTA
ATGTGTAAAAATAGAAAGGGACCTCTTTTAATAGGATCTGTTAAATCTAATATGGGTCAT
TCAGAGCCCGGTTCAGGGGTTTGTTCCATCAGTAAAGTAATTTTAACTTTTGAAAATGGA
AAAATTCCACCAAATATAAATTTGAAGACAGTCAAGCCAGAAATCACTGGTGTTATTGAA
GGACGAATGAAAATTGTCACTGAAACTCAAGATCTTTTACAACCTTTTATTCCTGTCAAT
TCATCAGGTTTCGGTGGAGCGAATTGTCATGTACTCCTTCAAATAAATCCAAAAACAAAG
GTTAACAAAGGAATTCCAAATGATAGAATTCCCCGTTTGATATTTTGGTCAGGACGAACT
GAAGAAGCCGTCAATGAAATTTTAGATAGTGTTACAACACAACCACTTGATGCTGAATAT
ATTGCACTCCTTCATAGCTCACAAGCTGAGTCTGTAATATCAAATTTGTACAAAGGCTAT
GCTGTTTATATACAAGATAATGATAACAATATCAATGCAGCATGTGTAACAAGAGAAGTT
CAACATTTCAATGGACACAAAAGACCAATGGTTTGGATTTACAGTGGTATGGGTTCACAA
TGGTGTGCAATGGGAGCTGCATTGATGAAAATTCCAATTTTTGCTAATGCAATTGAAACA
TGTCACAATGTACTTTTGACACGTGGACTAAATTTGAAAGACATTATTACATCTGCTGAT
CCGAGTACATTTGATAATATTTTACATTCATTCATTGGCATTGCTGCTATTCAAGTTGGT
TTAACAGATGTATTAAAAGCAGTAGGTTTAGAACCAGATTATATTGTTGGTCATTCACTT
GGTGAACTTGGTTGTGCTTATGCTGACAACTGCTGCACTGCTGAAGAAATGATTCTTTCT
GCTTATTCTCGTGGCATGGTGAGCTTAGAAACGAAAGTTGTTTTTGGATCAATGGCAGCT
GTTGGACTCGGTTATAATCAATTGAAAAATATTCTCCCAGATGGTGTTGAAATTGCATGT
CATAACAGTTTTGAATCAAGTACGATCTCAGGTCCAGCGGAAAATGTTGCCAAATTCGTT
GCTGAGTTAAAATCACAAGGAATTTTTGCAAAAGAAGTTAATTGCTCAAATATTCCATAC
CATAGCTCATATATTTCAGAAATGGGGCCAAACTTACTTGCTCGACTTCAAAAAATTCAC
AAGCCAATGAAAAGGTCATCAAAATGGATAAGCTCAAGCATTCCACAATCAGAATGGCAT
TTAGACAAAGCCAAATATACATCTGCTGAATATCAAACAAATAATGTTCTCAATCCAGTT
CTTTTTGAAGAAGCAATAAATCACTTGCCAAAAAATGCTGTTTGTATTGAAATAGCACCG
TACGGATTATTGCAGGCTATTCTTAAAAGATCATTGAGTGATTCAGTTCATGTATCATTG
ACCAAAAAGGGGGATGTCAATAACGATCAATTTATGCTGAGTGCTTTAGGAAAAATCTAC
TGCAACGGTTATGATATGGACATTTCAAATCTATTCCCAAAAATTCATTTTCCGGTCTCA
CGAGGAACGAAAATGATTTCTCCATACATAAAATGGGATCATAGTGAAGATCACTATGTA
ATGCGTTTTGAAGATTGTTCGGAAGGAAAGAGTGCTGAACGGAAAGTTCCAATTTCCTTG
AATGACGTTGAATATGAATATATTCAAGGGCATTGCATTGACGGTCGCTGTCTTTTCCCG
GCAACTGGTTATATTTTTTTAGCGTGGGAAACTTTTGCAATGACTAAAGGAAAAATGTAC
TTTGATATGAATGTCGAATTTGAAGATTTAAAATTCTTGAGAGCAACATCTTTGACTAAA
GATTATGATGTAGAGCTCACAATTGTCATTCAGCCAGGAACTGGAAAATTTGAAATTTCT
GAAGGTAGCTCTACAATTGTGACTGGCAATATCAAGCAGGTTGAAAGTCCGAAATTAAAA
GAATTTCAAAAGAGTTCAAAATTGAATGTTTTAAAATCAAGAGATTTCTATAAAGAGCTA
AGGTTACGAGGTTATCATTACAGTGATATTTTCCAATCAGTCATTGAGGGAAGCTTTAAT
GGAAGTTACGGAAAAATAAAATGGGATTCAAATTGGATTGCATTTCTTGACTGTCTTTTG
CAATTAAAAATTATCGGAAAAGACACAAGATCATTAGTTTTACCAACAGCAATTCAAAAA
GTAACAATTCATACGTCAAAACATTTAGAAGAATTGAAAAACTTTGCTGATGAAAGTGAA
GCTTATTTTAATGCATTCATAAATGAAGACCTCAATATCATTCAATGTGGTGGAGTAGAA
ATAGTAAATTTACAATCGAGTTCTGTTGGAAGACGAAAACCTCTAGGAGTTCCAGTTTTA
AATTCATATGAATTTGTTCCTTATGAGTGTACTAATTTAATGAACCGAAGTAATGCAGCT
CGCATCATATCTCAACTTTTAATTGAAAATCTTCAAATCACAAAAGTTAAAGCTGTTGAA
ATCGATAGCACTGAAGGAGTTGAAACTATTCTAAGTGATATTAAGAATGCTTTGATGGAT
ATGCCCTTGATCACATGTGAGATGACATTTTTATCGTCACGAACTATTGAAGATTTGAAT
GATATCATAGTTGCTGATGAAAAAATAGCTATGCATAAAGATTGCACAATCATTATTACA
TCAAATGAAGTGAAAGATGAACATTTGGAAAGTTTAATTGATAGTGGCTATTTATTAGTA
AGAAATTTGAAAAACCTACAAAACATATCAAAATGTTGCATTAAAATTTCATCAATTAAA
ACCGATAATGAAATTTTTACACTATTTCTTCATAAAAAGAAAAATGAAGAGACAAAACCT
ACAGCAATTGTTGTCTCAAACAATGACACTACGTTTAAATGGATCAATGTCGCTAAATCA
TTAATAAAATCGACTCCATTGATAATTGTTGCAGAAAATGAAATGACTTCAGGTATCATT
GGTTTAGTTAATTGTTTGAGAAAAGAAATTGACGGAAAATTAGTTCGATGTCTTTTTATC
GATGATTTAACAGCACCAACATTTGAAATGAATAATGAATTCTATCAGAAGCAAATAAAT
TTAAATCTTGCAATTAATGTTTATCGCAATGGTCGATGGGGAAGTTATCGACATCTTCCA
CTTATTTATGATATTGAAGAAAAATCTACAAAAGAACATTGTTTTGCTAATGCATTAGTT
AAATCAGATTTGTCCTCTTTAAAATGGTTACAAGGTCCATTGAACATCAAAGATGATGGA
ATTGTTAAAGTTCATTATGCTCCACTCAATTTCAAAGATGTTATGCTCGCAACTGGAAAA
ATTTCGGCAGAAATCTTTGTCAACACTCGTCTTGACCTCGAATGTGTGCTTGGTTTTGAA
TATTCAGGAATTTCTAAAAATGGCAAGAGAGTTATGGGTTTAATACCATCTGGTGCATTA
TCAACATTTATAAAATTAGATCCAGTGCTAACATGGGAATGCCCAAAAGAATGGAGTTTG
GCAGAAGCAGCAACTATTCCTTGCGTCTATTCAACAGTTTATTATGCATTCTTCATTAAA
TCACAGATACAAAAAGGAAAATCAATTTTGATTCATGCAGGAAGTGGAGGTATCGGTCTT
GCTGCAATACGAATAGCTTTTGCATACGGATTAGAAGTTTTTACAACTGTTAGCACAGAA
GAAAAAAAGAATTTCTTGTTAAATGAATTTCCTCAATTAAAACGGGATAATATTGGAAAC
TCACGTGATACATCTTTTGAAGAAATGATTGCTGTAAGAACAAAGGGCAAAGGTGTAGAT
TATGTATTGAATTCATTAGCTGAAGAGAAACTTCATGCTTCAATTAGATGTTTAGGTAAA
AGTGGAAAATTCCTCGAAATCGGTAAATTTGATATGGAAAAAGACACTAAGATTGGCATG
AGCTATTTCCTAAAAGAACTTTCATTCCATTCTATCATGCTTGATCAAATCTTTTATGCT
TCAACTGATGCAAAATTGCGTTTGCGAAGCTTTCTTGACCTAGATATCAAAAATGGAATT
ATCAAACCTTTTAAAACAAACATTTTCCAAGCAAATCAAATTGAACAAGTTTTTAGATAC
CTTGCAAGTGGTAAGCATATGGGTAAAGTCATTCTTCAGATAAGAAAAAATGAAAACGAC
ATTGATACTCTTCCAATCATTGCTTTGCCGAGAGTTTATTGCAATCCAGAACATTCTTAT
ATTATTCCTGGCGGTTTGGGTGGTTTTGGTCTCGAGCTTGCTGATTGGTTAATCTTGAGA
GGATGTAAGAAACTCATTTTGAGTTCAAGCCGTGGGATTACAAAACCATATCAAGCTTAT
CGTATAAAAATTTGGGAATCATATGGGGTAAAGGTTGTTATCAATACTTCAGATATCTCG
TCAAAGTCAGGCTGTGAAAAACTTATTCAAGAAGCACTCAAATATGGAGCTGTTGGTGGT
ATTTTCAATCTTGCTGCACAATTGCGTGATAGCATTTTTGAAAATCAAGATCCGATTAAG
TTTGTAGAATGTATGGGACCAAAGGCTTTTGCAACAAAATATCTTGATGAACTTTCAAGA
ACTTTGTGTCCCGAGTTGAAATATTTTGTTGTCTTTTCAAGTGTTGCTTGTGGTTTAGGG
AATGCTGGTCAAACAAATTATGGAATGGCTAACTCTGTGATGGAAAGAATTATGGAGCAA
AGAAATAAACTTGGATTGCCAGCAAAAGCCATTCAATGGGGTGCAGTAGGTGAAGTCGGT
TTAGTTGCTGATTTATTGGAAGATAAATTAGACATGGAAATTGGTGGAACATTGCAGCAA
AGAATTTCATCCTGTTTAGAAGAACTTGATGGTTTGATATCTGTAAAAAATCCAATTGTA
TCGAGTATGGTTGTGGCAGAAAAACAATTTTCATCTACTAAATCAAGCAACGTACTAGAA
GTTATTTTAAACATAATGGGAATAAGGGATGCAAAATCTATTTCTATGGAAACAACTTTT
GCTGAATTGGGTATGGACTCATTGATGACGGTTGAGATTCAGCAAACATTAGAACGTGAA
CATAATTTTGTTATCTCAACACAAGACCTAAGAAGTTTAACTTTAACGAAGTTGATTGAG
AATGTTGGAAGCAAAGGTGCAACAATAAGCAAGGAAAATGATGAATTAATGAATGGTATG
AACATGTTGATAAGAAATCTTGGAAATGAAAAAGATAGTCAAGAGTTATTAATGGAGTTA
TCGAATGATAAGAAAGTCAACAGATTAACAATCTTTATTCCTGGCATCGAAGGTGTTGGC
GGTGATATATGGAATCAAATGGCTAACAAAATTGATGGTGTTTCACTCATTATTCAACAC
AAAAATATTGAAGACACATCATCTTTCAATTCGTTTGTTAATGAGATATTTTTCAAATCA
TTCGACACGATCAAAAATTTCAAAGAAATTCATTTAATCGGTTTTTCCTTTGGCTCATTG
ATTGCCCTAAAACTTGCAAGTATCTTAGAAAATCATGATAAAACAATTAAATTAACTTTA
ATTGACGGATCACCATTGTTTTTAACAAAACTCATGAAAAATTTCTTAGGCACTCATAAA
TTTGAAGACATAATTGAAACACTCGTGTTAAAATGTATTGTTGAGAAAATAATTCCAAAT
GAAGCATCAAAAGTTGCTCATATAATTCAATCGAAATTACTTTTGGATGAAAAAGTTACA
AACTTATTGAAAGAATTTGAAGGTTTGAGAATTTATTCACAAAAATATGCTATCGAAATT
GTAAATGCAATAGTCAAAAGACTAAGATTAATTCACAATCTTAATATTGATGAATTCAAA
ACTTTTAGAAACATCAAATTGAAGCTCATTAGACCACAAAAATCATCACTCAAAAATATT
GAAGATGATTATGGTTTAAAAATATTTTCAAATGAAACCATTGATATAAAATTTGTCAGC
GGTGATCATTTGACTATGTTGGACACTGAAGAATTTAAAAATATTTTGAAAGATAATAAT
TAA
>g9479.t1 Gene=g9479 Length=2340
MSKIKEIGDDVVISGVSGRFPNSRNMHEFAENLYNKIDMVDEEEKRWKHVNPECPKRMGK
IDDIEKFDASFFGVSYRQARTMDPQCRMMLEHAYEAVIDSGMCPKQLRGTKTGVFIGMSY
NESEKKWIYENISKEGLGITGSAKALVANRVSFVLGTTGPSFVLDTACSSSMYALDIAYK
MISSGECDAAIVGGTNLCLHPHLSYQFVKLGVVSKDGYCRPFDKDASGFTRAETNCVLFL
QRRIDAKRVYATVLHSKTNCDGFKEEGINFPSSKRQAQLLTEFYDEVGIPPNDPEIGYFE
AHCTGTKVGDAEECKAIDEVMCKNRKGPLLIGSVKSNMGHSEPGSGVCSISKVILTFENG
KIPPNINLKTVKPEITGVIEGRMKIVTETQDLLQPFIPVNSSGFGGANCHVLLQINPKTK
VNKGIPNDRIPRLIFWSGRTEEAVNEILDSVTTQPLDAEYIALLHSSQAESVISNLYKGY
AVYIQDNDNNINAACVTREVQHFNGHKRPMVWIYSGMGSQWCAMGAALMKIPIFANAIET
CHNVLLTRGLNLKDIITSADPSTFDNILHSFIGIAAIQVGLTDVLKAVGLEPDYIVGHSL
GELGCAYADNCCTAEEMILSAYSRGMVSLETKVVFGSMAAVGLGYNQLKNILPDGVEIAC
HNSFESSTISGPAENVAKFVAELKSQGIFAKEVNCSNIPYHSSYISEMGPNLLARLQKIH
KPMKRSSKWISSSIPQSEWHLDKAKYTSAEYQTNNVLNPVLFEEAINHLPKNAVCIEIAP
YGLLQAILKRSLSDSVHVSLTKKGDVNNDQFMLSALGKIYCNGYDMDISNLFPKIHFPVS
RGTKMISPYIKWDHSEDHYVMRFEDCSEGKSAERKVPISLNDVEYEYIQGHCIDGRCLFP
ATGYIFLAWETFAMTKGKMYFDMNVEFEDLKFLRATSLTKDYDVELTIVIQPGTGKFEIS
EGSSTIVTGNIKQVESPKLKEFQKSSKLNVLKSRDFYKELRLRGYHYSDIFQSVIEGSFN
GSYGKIKWDSNWIAFLDCLLQLKIIGKDTRSLVLPTAIQKVTIHTSKHLEELKNFADESE
AYFNAFINEDLNIIQCGGVEIVNLQSSSVGRRKPLGVPVLNSYEFVPYECTNLMNRSNAA
RIISQLLIENLQITKVKAVEIDSTEGVETILSDIKNALMDMPLITCEMTFLSSRTIEDLN
DIIVADEKIAMHKDCTIIITSNEVKDEHLESLIDSGYLLVRNLKNLQNISKCCIKISSIK
TDNEIFTLFLHKKKNEETKPTAIVVSNNDTTFKWINVAKSLIKSTPLIIVAENEMTSGII
GLVNCLRKEIDGKLVRCLFIDDLTAPTFEMNNEFYQKQINLNLAINVYRNGRWGSYRHLP
LIYDIEEKSTKEHCFANALVKSDLSSLKWLQGPLNIKDDGIVKVHYAPLNFKDVMLATGK
ISAEIFVNTRLDLECVLGFEYSGISKNGKRVMGLIPSGALSTFIKLDPVLTWECPKEWSL
AEAATIPCVYSTVYYAFFIKSQIQKGKSILIHAGSGGIGLAAIRIAFAYGLEVFTTVSTE
EKKNFLLNEFPQLKRDNIGNSRDTSFEEMIAVRTKGKGVDYVLNSLAEEKLHASIRCLGK
SGKFLEIGKFDMEKDTKIGMSYFLKELSFHSIMLDQIFYASTDAKLRLRSFLDLDIKNGI
IKPFKTNIFQANQIEQVFRYLASGKHMGKVILQIRKNENDIDTLPIIALPRVYCNPEHSY
IIPGGLGGFGLELADWLILRGCKKLILSSSRGITKPYQAYRIKIWESYGVKVVINTSDIS
SKSGCEKLIQEALKYGAVGGIFNLAAQLRDSIFENQDPIKFVECMGPKAFATKYLDELSR
TLCPELKYFVVFSSVACGLGNAGQTNYGMANSVMERIMEQRNKLGLPAKAIQWGAVGEVG
LVADLLEDKLDMEIGGTLQQRISSCLEELDGLISVKNPIVSSMVVAEKQFSSTKSSNVLE
VILNIMGIRDAKSISMETTFAELGMDSLMTVEIQQTLEREHNFVISTQDLRSLTLTKLIE
NVGSKGATISKENDELMNGMNMLIRNLGNEKDSQELLMELSNDKKVNRLTIFIPGIEGVG
GDIWNQMANKIDGVSLIIQHKNIEDTSSFNSFVNEIFFKSFDTIKNFKEIHLIGFSFGSL
IALKLASILENHDKTIKLTLIDGSPLFLTKLMKNFLGTHKFEDIIETLVLKCIVEKIIPN
EASKVAHIIQSKLLLDEKVTNLLKEFEGLRIYSQKYAIEIVNAIVKRLRLIHNLNIDEFK
TFRNIKLKLIRPQKSSLKNIEDDYGLKIFSNETIDIKFVSGDHLTMLDTEEFKNILKDNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 34 | g9479.t1 | CDD | cd00833 | PKS | 9 | 413 | 1.81301E-144 |
| 35 | g9479.t1 | CDD | cd05195 | enoyl_red | 1422 | 1712 | 1.57094E-100 |
| 33 | g9479.t1 | CDD | cd08954 | KR_1_FAS_SDR_x | 1718 | 1966 | 1.2671E-54 |
| 20 | g9479.t1 | Gene3D | G3DSA:3.40.47.10 | - | 9 | 415 | 1.0E-130 |
| 25 | g9479.t1 | Gene3D | G3DSA:3.30.70.3290 | - | 430 | 859 | 7.3E-169 |
| 23 | g9479.t1 | Gene3D | G3DSA:3.40.366.10 | - | 506 | 823 | 7.3E-169 |
| 26 | g9479.t1 | Gene3D | G3DSA:3.10.129.110 | - | 872 | 1114 | 2.5E-76 |
| 19 | g9479.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1289 | 1965 | 3.9E-282 |
| 22 | g9479.t1 | Gene3D | G3DSA:3.90.180.10 | - | 1383 | 1732 | 3.9E-282 |
| 21 | g9479.t1 | Gene3D | G3DSA:1.10.1200.10 | - | 1971 | 2053 | 1.1E-17 |
| 24 | g9479.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 2090 | 2331 | 3.6E-29 |
| 27 | g9479.t1 | Gene3D | G3DSA:1.10.1470.20 | Fatty acid synthase; domain 2 | 2188 | 2274 | 3.6E-29 |
| 9 | g9479.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 7 | 2338 | 0.0 |
| 10 | g9479.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 7 | 2338 | 0.0 |
| 4 | g9479.t1 | Pfam | PF00109 | Beta-ketoacyl synthase, N-terminal domain | 10 | 245 | 8.4E-62 |
| 1 | g9479.t1 | Pfam | PF02801 | Beta-ketoacyl synthase, C-terminal domain | 250 | 368 | 2.0E-31 |
| 8 | g9479.t1 | Pfam | PF16197 | Ketoacyl-synthetase C-terminal extension | 373 | 482 | 2.9E-24 |
| 7 | g9479.t1 | Pfam | PF00698 | Acyl transferase domain | 511 | 794 | 1.1E-65 |
| 3 | g9479.t1 | Pfam | PF14765 | Polyketide synthase dehydratase | 884 | 1071 | 8.6E-15 |
| 5 | g9479.t1 | Pfam | PF00107 | Zinc-binding dehydrogenase | 1537 | 1654 | 1.7E-13 |
| 2 | g9479.t1 | Pfam | PF08659 | KR domain | 1739 | 1917 | 1.4E-39 |
| 6 | g9479.t1 | Pfam | PF00550 | Phosphopantetheine attachment site | 1978 | 2038 | 4.0E-8 |
| 30 | g9479.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 1497 | - |
| 32 | g9479.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1498 | 1517 | - |
| 28 | g9479.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1518 | 1528 | - |
| 31 | g9479.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1529 | 1551 | - |
| 29 | g9479.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1552 | 2340 | - |
| 36 | g9479.t1 | ProSitePatterns | PS00606 | Beta-ketoacyl synthases active site. | 159 | 175 | - |
| 42 | g9479.t1 | ProSiteProfiles | PS50075 | Carrier protein (CP) domain profile. | 1972 | 2060 | 11.88 |
| 40 | g9479.t1 | SMART | SM00825 | Beta-ketoacyl synthase | 11 | 415 | 3.6E-104 |
| 38 | g9479.t1 | SMART | SM00827 | Acyl transferase domain in polyketide synthase (PKS) enzymes. | 513 | 804 | 6.8E-23 |
| 37 | g9479.t1 | SMART | SM00829 | PKS_ER_names_mod | 1402 | 1712 | 5.9E-110 |
| 41 | g9479.t1 | SMART | SM00822 | This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. | 1738 | 1919 | 2.4E-20 |
| 39 | g9479.t1 | SMART | SM00823 | Phosphopantetheine attachment site | 1975 | 2033 | 1.6E-4 |
| 13 | g9479.t1 | SUPERFAMILY | SSF53901 | Thiolase-like | 9 | 367 | 1.6E-63 |
| 12 | g9479.t1 | SUPERFAMILY | SSF52151 | FabD/lysophospholipase-like | 510 | 798 | 9.94E-37 |
| 18 | g9479.t1 | SUPERFAMILY | SSF55048 | Probable ACP-binding domain of malonyl-CoA ACP transacylase | 636 | 695 | 1.57E-8 |
| 16 | g9479.t1 | SUPERFAMILY | SSF50129 | GroES-like | 1418 | 1532 | 1.31E-16 |
| 15 | g9479.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1498 | 1659 | 3.03E-34 |
| 14 | g9479.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1739 | 1933 | 4.07E-27 |
| 17 | g9479.t1 | SUPERFAMILY | SSF47336 | ACP-like | 1977 | 2042 | 1.96E-10 |
| 11 | g9479.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 2066 | 2333 | 3.0E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031177 | phosphopantetheine binding | MF |
| GO:0016746 | acyltransferase activity | MF |
| GO:0055114 | NA | NA |
| GO:0004315 | 3-oxoacyl-[acyl-carrier-protein] synthase activity | MF |
| GO:0006633 | fatty acid biosynthetic process | BP |
| GO:0016740 | transferase activity | MF |
| GO:0004312 | fatty acid synthase activity | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
