General information for g9518.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chromodomain-helicase-DNA-binding protein Mi-2-like protein.
Parent gene
- The parent gene g9518 is located on chr_1: 3878107..3879929 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9518 | g9518.t1 | TSS | g9518.t1 | 3871325 | 3871325 |
| chr_1 | g9518 | g9518.t1 | isoform | g9518.t1 | 3871482 | 3878107 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon1 | 3871482 | 3871518 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS1 | 3871482 | 3871518 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon2 | 3871992 | 3872068 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS2 | 3871992 | 3872068 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon3 | 3872123 | 3875467 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS3 | 3872123 | 3875467 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon4 | 3875532 | 3875679 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS4 | 3875532 | 3875679 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon5 | 3875747 | 3876039 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS5 | 3875747 | 3876039 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon6 | 3876099 | 3877554 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS6 | 3876099 | 3877554 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon7 | 3877766 | 3877966 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS7 | 3877766 | 3877966 |
| chr_1 | g9518 | g9518.t1 | exon | g9518.t1.exon8 | 3878025 | 3878107 |
| chr_1 | g9518 | g9518.t1 | cds | g9518.t1.CDS8 | 3878025 | 3878107 |
| chr_1 | g9518 | g9518.t1 | TTS | g9518.t1 | NA | NA |
Sequences
>g9518.t1 Gene=g9518 Length=5640
ATGTCAAATAGTGAGGATTATGATGAAAAATTTGGAGCTGAGGATGATAGCGGTAATTTG
GATGAAACATTAGGCGGTTCTGGTGATGAAGAAGCATCAAAGAATGTCAATAATGATGAG
GATGATGATTATGAACCGGAAGATAGAAAAAGAAAGAAGGGAAAGAAACGAAAAGTTCGA
AGTGAAGAAAAATCGAAAGGTAGAAAGAAGAAAAAGCGTAGGAAGAATGAATCTGAAGAA
GAACCAGAAGAGCAAGAACGTGGTGGTGATTCTGATGAATATTCCTTAAGTAAGCGTGGT
AGAAAGAAGCGCGAAAAGGAAGAAAAGAAACAAGCAACTCCACCACCGCCAGCTCAACAA
AGTGAATCAAACATGCCAACAATTGAGGAAGTCTGCAGTACTTTCGACCTAACTGACGTT
CCTATCGAATATTCTGATGCTGATTATCAAAATCTCGTCACATATAAAATGTTTCAACAG
CACGTTCGTCCAATTCTTCAAAAAGAAAACCCACGCGTGCCAATGTCAAAATTAATGATG
CTCGTTGCTGCCAAATGGCGTGAATTTTCAGAAATCAATCCTCATATGCAACAAGAAGAA
GAAGAAGTCGAAAAAGAAGAGGAAGAAGAAGCTTCACCGAAATCTCCTGAATTTACACCA
AAAGAAACGAAATCAAGATCAAGCAAAAAATCTGTAAAAATTGCTGAAGACACTTTTGAT
GATGAATATGAAGAAGAAGAAGTTAAATCAAAATCAAAGAAACGAGGTCGAAGTGGAAAT
AGTCAAAAATCAAAAGGTCGAAAACAAAAAGTTCCAACATTAAAAATTAAATTTGGAAAG
CGTAAAAATGCAAGTTCAGAAGATGAACAAGAAGATTCTGCAGAAGGATCAGAACGTGAA
TCTGATATTGAATTTGAAAAAATGTTGCAGCAAACGGATGAAAATGAATTGGATGAGACA
CCTGCAACTGCTGGTGCAAGCAGAAGTGGCAGTAATAATGGTGCTGGAAGTGAAGAAACA
ACAACTGAGCCTGCAGTTCGTAAAAAGGCAAAAACAAAAATTGGCAATAAATCAAAGAAA
AAGAAGCCAAAAAAGACAAATTTTCAAGATGATGACATTGAACATCAAGATTATTGTGAA
GCATGTCAACAAGGTGGTGAAATTATTCTTTGTGACACTTGTCCTAAAGCATATCATCTT
GTATGTTTGGATCCTGAATTGGAAGAAGCACCGGAAGGCAAATGGAGTTGTCCAACTTGT
GAAGCAGAAGGTCCAATTGAGCAAGATGATGATGAACATCAAGAATTTTGTCGAATTTGT
AAAGATGGCGGTGAACTTTTATGTTGTGACTCATGTCCTTCTGCATATCACACATTCTGC
TTAGATCCACCACTTAGTGAAATTCCAGATGGTGATTGGCGTTGTCCTCGCTGTGGTTGT
CCACCATTGCCTGGAAAAGTCGCAAAAATTCTCACATGGCGTTGGGCAGAACCAGTACCA
GAAGATCCTAACAATCCACAAGCATCAACTTCAAAAGGTCCACCACCACAGGCAAGAACT
CGTGAATATTTTATTAAATGGAAAGATATGAGCTATTGGCATTGCAGTTGGATTACAGAA
TTACAATTGGATGTTTTTCATCCATTAATGTTTCGTTATTATACACGTAAATATGATATG
GAAGAACCACCAAGATTTGAAGAGCAACTTGATGAACAAGACAATCGATTTAAAAGATTA
AAACGTCATCGTGGTGCTCATGGTGCACAACAGGATGATGAAGAGAAGAATCTTGAAGAA
AAATTCTATCGTTATGGAATCAAACCTGAATGGTTGGTTGTTCATCGTGTCATTAATCAC
CGACAAATGCGTGATGGTCGAACTCTTTATTTTGTCAAATGGCGTGAACTTCCATATGAT
CAATCAACTTGGGAAGAAGAAACTGATGAAATTCCCGGTTTAAAAGCTGCTATCGAATAT
TATCTTGATTTAAGAGCAAATTCAATGGATCCTGGTTCTGCAAAAAAGAATAATAAAAAG
AAAGGACGTCGTCGAACTAAAGAAACGGATGAAGAAGAGAAAGAATATCAAACAAAACGA
TATAATCCACCACCAGATCGTCCACTGACTGATTTAAGAAAGAAATATGAAGTTCAGCCA
GAATATTTTAATGAGACTGGTATGCAATTGCACAATTATCAAATTGAAGGCATTAATTGG
CTTCGTTATTCTTGGTCACATGGAACTGATACAATTTTGGCTGATGAAATGGGTTTGGGA
AAAACAATTCAAACTGCAACATTCCTTTATTCTTTGTATAAGGAAGGTCATTGTAATGGA
CCATTTTTGATTGCTGTCCCACTTTCAACCATTGTCAATTGGGAACGTGAATTTGAATTA
TGGGCACCAGATTTTTATTGTGTGACTTATGTTGGTGACAAAGAAGCACGTGCTGTAATT
CGTGAAAATGAATTGAGTTTTGAAGAAGGTGCAGGTGGAAAAAGAACCACAAAAATTAAA
AGTTCAACCATTAAATTTAATGTTTTGCTGACAAGTTATGAATTGATCTCAATTGATTCT
GCCTGTTTAGCTTCAATTGATTGGAAAGTTTTGGTTGTTGATGAAGCTCACAGATTGAAA
TCAAATCAATCGAAATTTTTCAAATATCTTGCAAGCTATAATATAGAATACAAATTATTG
CTTACTGGTACACCATTGCAAAATAATCTTGAAGAATTGTTCCATCTTTTGAACTTTTTA
TGCAAGGAAAAATTCAATGATTTATCTGCATTCCAAAGTGAATTTGCTGATATTTCAAAA
GAAGAACAAGTACAGAAACTTCACGATATGCTTGGACCACACATGTTGCGACGTTTAAAA
GCTGATGTCTTGCGTAATATGCCATCAAAAAGTGAATTTATTGTTCGTGTTGAACTTTCA
CCATTGCAGAAAAAATATTACAAATATATTTTGACAAGAAATTATGAAGCATTGAATCCT
AAATCAGGTGGCGGAGCTTGCTCACTTTTAAATATCATGATGGATTTGAAAAAATGCTGC
AATCATCCATATCTATTTCCTGCTGCATCTGAAGAGGCACCTTTAGGACCTGGTGGAAAT
TATGAAATCACAGCACTCACTAAAGCTGCAGGAAAACTTGTTTTGCTATCAAAAATGATG
AGAATTTTAAAAAGGCAAGGACATCGTGTACTAATTTTCTCACAAATGACTCGTATGCTT
GACATTCTTGAAGATTTCTTAGAAGGCGAAGGTTATAAATATGAAAGAATTGATGGTGGA
ATCACCGGAACTTTAAGACAGGAAGCAATTGATCGTTTCAATGCACCTGGTGCTCAACAA
TTTGCATTCTTGCTATCAACACGTGCTGGTGGTTTGGGCATCAATTTAGCTACTGCTGAC
ACTGTCATCATTTATGATTCTGATTGGAATCCACATAATGATATTCAAGCATTTTCTCGT
GCACATCGTATTGGTCAAGCAAACAAGGTCATGATTTATCGTTTTGTAACAAGAAATTCA
GTAGAAGAGCGTGTCACACAAGTTGCTAAGAGAAAAATGATGTTGACACATTTGGTTGTT
AGACCTGGCATGGGCGGTAAAGGAACAAATTTTACAAAACAAGAACTCGATGATATTTTA
AGATTTGGAACAGAAGAATTGTTTAAAGAAGATGGAAAAGAAGAAGAAGCAATTCATTAT
GATGACAAAGCGGTTGAAGAATTGGTTGATCGCTCGAAAGGTGGCATTGAAGAGAAAGAA
AATTGGGCTAATGAATATCTTTCAAGTTTCAAAGTTGCAAGTTACAGTACTAAAGAAGAG
GAAGAAGAAGAAACTGAAATTATCAAACAAGAATCTGAAAATAATGATCCTGCTTTTTGG
GTTAAACTACTTAGACATCATTATGAACAACATCAAGAAGATGTTGGTAGATCTCTTGGT
AAAGGCAAGCGTGTTCGTAAGCAGGTGAATTATACAGATGGTGGTGTAGTCACAAATGAA
TCTCGCGAAGATCAAACATGGCAAGAGAATGTTTCTGATTATAACAACTCTGACTACAGT
GGCTATTCTGATGAAGAAAATCAAGAAGATGATGATGAAAACAGTGAAAGTGGCAAACGT
AATCGTCGTCGTGAAAACAGAAATAATGACAGAGATAGACCATTGCCACCTCTTCTTGCT
TGTGTTGGAGGTAATATTGAAGTTCTTGGATTCAGTGCAAGACAACGTAAGAGCTTCTTG
AACAACATCATGCGATTCGGAATGCCACCAGATACAACTACAAATGGAAATAATTCATGG
TTAGTGAGAGATTTGCGTGGCAAACCTGAAAAACATTTCAGAGCATATGTTAACTTGTTC
ATGCGACATCTTTGTGAACCTGGTGTTGATAGTGCTGAAACATTTGCTGATGGAGTTCCT
CGTGAAGGGTTAAGTAGACAACATGTTCTTACTCGTATTGGTGTAATGTCATTGATTCGT
AAAAAAGTTCTTGAATTTGAACATATCAATGGCTATTATTCAATGCCAGAATTGATTAAA
AAACCATATGATCCAAATGGAAAACAAGAAGACATCAAAGATGAAGATATGTCAAAGAGT
GCAACAACGAGCACTGCACCATCACCTGCTCCATCAAATAATGAAAAGTCTGATGAAAAA
GATCGTGACAGTGATGAAAAGAAGCCTGAAGAAGAGTCTGAAAAATCTGATAAAACTGAT
ATAGGTGACAATGATAAAACCGAAGCATCAAGTCCAAGTGGATCAGTCAAAAGTGAAGTC
AAGAAAGAAGACTCAAATGGATCAGATGAGAAAAAGACCGATCCTGATGACGATGATGAT
GTTGTGCTTGTATCAGAAGATTCCAAACCAAAAGTAAATCTTGAAGTGCACAAACGTCAA
TTTATGTTTAACATTGTTGATGGTGGTTTTACAGAACTACATACATTGTGGATCAATGAA
GAAAAAGCTGCATCACCTTCACGTGAATATGAAATTTGGCATAGACGTCATGATTATTGG
TTGCTTGCTGGTATAGTTCAGCATGGCTATGGTCGCTGGCAAGACATTCAAAATGATATT
CGTTTTGCAATCATTAATGAACCATTCAAAATGGACATAAATAAAGGAAATTTCCTTGAA
ATTAAAAATAAATTCTTGGCTAGAAGATTTAAATTGTTAGAACAAGCACTTGTGATTGAA
GAACAATTAAGACGAGCTGCTTATTTAAATTTAACTCAAGATCCTACACATCCAGCAATG
AGTTTGAACGCACGTTTTGCTGAAGTTGAATGTCTTGCAGAATCTCATCAACATTTGAGT
AAAGAAAGTCTTGCAGGAAATAAACCAGCAAATGCAGTTTTACATAAAGTTTTAAATCAA
CTTGAAGAATTGCTATCTGACATGAAATCTGATGTAGCTCGATTGCCAGCAACACTTGCA
CGAATTCCTCCAGTTGCTCAACGTTTGCAACTTAGCGAAAGAGTAATTCTATCACGATTG
GCTGCAACAAGTTCTGCTGCATCTTCATCAGCGACAGCGAATCTCATGAATTTCCCATCT
GGTTTTGCAAATACAGCAAATGCAGTCGCAGCCGCGGCACAACATTTTAGATCTCAATAA
>g9518.t1 Gene=g9518 Length=1879
MSNSEDYDEKFGAEDDSGNLDETLGGSGDEEASKNVNNDEDDDYEPEDRKRKKGKKRKVR
SEEKSKGRKKKKRRKNESEEEPEEQERGGDSDEYSLSKRGRKKREKEEKKQATPPPPAQQ
SESNMPTIEEVCSTFDLTDVPIEYSDADYQNLVTYKMFQQHVRPILQKENPRVPMSKLMM
LVAAKWREFSEINPHMQQEEEEVEKEEEEEASPKSPEFTPKETKSRSSKKSVKIAEDTFD
DEYEEEEVKSKSKKRGRSGNSQKSKGRKQKVPTLKIKFGKRKNASSEDEQEDSAEGSERE
SDIEFEKMLQQTDENELDETPATAGASRSGSNNGAGSEETTTEPAVRKKAKTKIGNKSKK
KKPKKTNFQDDDIEHQDYCEACQQGGEIILCDTCPKAYHLVCLDPELEEAPEGKWSCPTC
EAEGPIEQDDDEHQEFCRICKDGGELLCCDSCPSAYHTFCLDPPLSEIPDGDWRCPRCGC
PPLPGKVAKILTWRWAEPVPEDPNNPQASTSKGPPPQARTREYFIKWKDMSYWHCSWITE
LQLDVFHPLMFRYYTRKYDMEEPPRFEEQLDEQDNRFKRLKRHRGAHGAQQDDEEKNLEE
KFYRYGIKPEWLVVHRVINHRQMRDGRTLYFVKWRELPYDQSTWEEETDEIPGLKAAIEY
YLDLRANSMDPGSAKKNNKKKGRRRTKETDEEEKEYQTKRYNPPPDRPLTDLRKKYEVQP
EYFNETGMQLHNYQIEGINWLRYSWSHGTDTILADEMGLGKTIQTATFLYSLYKEGHCNG
PFLIAVPLSTIVNWEREFELWAPDFYCVTYVGDKEARAVIRENELSFEEGAGGKRTTKIK
SSTIKFNVLLTSYELISIDSACLASIDWKVLVVDEAHRLKSNQSKFFKYLASYNIEYKLL
LTGTPLQNNLEELFHLLNFLCKEKFNDLSAFQSEFADISKEEQVQKLHDMLGPHMLRRLK
ADVLRNMPSKSEFIVRVELSPLQKKYYKYILTRNYEALNPKSGGGACSLLNIMMDLKKCC
NHPYLFPAASEEAPLGPGGNYEITALTKAAGKLVLLSKMMRILKRQGHRVLIFSQMTRML
DILEDFLEGEGYKYERIDGGITGTLRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATAD
TVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV
RPGMGGKGTNFTKQELDDILRFGTEELFKEDGKEEEAIHYDDKAVEELVDRSKGGIEEKE
NWANEYLSSFKVASYSTKEEEEEETEIIKQESENNDPAFWVKLLRHHYEQHQEDVGRSLG
KGKRVRKQVNYTDGGVVTNESREDQTWQENVSDYNNSDYSGYSDEENQEDDDENSESGKR
NRRRENRNNDRDRPLPPLLACVGGNIEVLGFSARQRKSFLNNIMRFGMPPDTTTNGNNSW
LVRDLRGKPEKHFRAYVNLFMRHLCEPGVDSAETFADGVPREGLSRQHVLTRIGVMSLIR
KKVLEFEHINGYYSMPELIKKPYDPNGKQEDIKDEDMSKSATTSTAPSPAPSNNEKSDEK
DRDSDEKKPEEESEKSDKTDIGDNDKTEASSPSGSVKSEVKKEDSNGSDEKKTDPDDDDD
VVLVSEDSKPKVNLEVHKRQFMFNIVDGGFTELHTLWINEEKAASPSREYEIWHRRHDYW
LLAGIVQHGYGRWQDIQNDIRFAIINEPFKMDINKGNFLEIKNKFLARRFKLLEQALVIE
EQLRRAAYLNLTQDPTHPAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQ
LEELLSDMKSDVARLPATLARIPPVAQRLQLSERVILSRLAATSSAASSSATANLMNFPS
GFANTANAVAAAAQHFRSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 30 | g9518.t1 | CDD | cd15531 | PHD1_CHD_II | 378 | 420 | 5.01371E-29 |
| 28 | g9518.t1 | CDD | cd15532 | PHD2_CHD_II | 436 | 478 | 1.77011E-29 |
| 27 | g9518.t1 | CDD | cd18667 | CD1_tandem_CHD3-4_like | 483 | 556 | 6.32931E-35 |
| 31 | g9518.t1 | CDD | cd18662 | CD2_tandem_CHD3-4_like | 609 | 661 | 4.94036E-27 |
| 26 | g9518.t1 | CDD | cd17994 | DEXHc_CHD3_4_5 | 730 | 958 | 1.65514E-127 |
| 29 | g9518.t1 | CDD | cd18793 | SF2_C_SNF | 1051 | 1176 | 4.56381E-58 |
| 24 | g9518.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 340 | 425 | 1.2E-18 |
| 25 | g9518.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 426 | 484 | 8.0E-20 |
| 22 | g9518.t1 | Gene3D | G3DSA:2.40.50.40 | - | 486 | 584 | 1.9E-7 |
| 21 | g9518.t1 | Gene3D | G3DSA:2.40.50.40 | - | 605 | 663 | 3.7E-21 |
| 19 | g9518.t1 | Gene3D | G3DSA:3.40.50.10810 | - | 726 | 967 | 9.5E-195 |
| 20 | g9518.t1 | Gene3D | G3DSA:3.40.50.300 | - | 968 | 1196 | 9.5E-195 |
| 23 | g9518.t1 | Gene3D | G3DSA:1.10.10.60 | - | 1640 | 1744 | 7.5E-7 |
| 44 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 132 | - |
| 53 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - |
| 58 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 73 | - |
| 51 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 112 | - |
| 41 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 131 | - |
| 45 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 367 | - |
| 43 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 237 | - |
| 55 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 277 | - |
| 49 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 314 | - |
| 50 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 340 | - |
| 57 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 711 | - |
| 54 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 711 | - |
| 48 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1313 | 1396 | - |
| 56 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1332 | 1362 | - |
| 47 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1373 | 1392 | - |
| 46 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1530 | 1622 | - |
| 52 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1539 | 1553 | - |
| 40 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1554 | 1585 | - |
| 42 | g9518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1597 | 1612 | - |
| 10 | g9518.t1 | PANTHER | PTHR45623:SF9 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 | 38 | 1579 | 0.0 |
| 12 | g9518.t1 | PANTHER | PTHR45623 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 38 | 1579 | 0.0 |
| 11 | g9518.t1 | PANTHER | PTHR45623:SF9 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 | 1559 | 1865 | 0.0 |
| 13 | g9518.t1 | PANTHER | PTHR45623 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 1559 | 1865 | 0.0 |
| 2 | g9518.t1 | Pfam | PF08073 | CHDNT (NUC034) domain | 142 | 194 | 9.0E-29 |
| 4 | g9518.t1 | Pfam | PF00628 | PHD-finger | 378 | 422 | 1.3E-10 |
| 3 | g9518.t1 | Pfam | PF00628 | PHD-finger | 436 | 479 | 4.0E-10 |
| 6 | g9518.t1 | Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 613 | 662 | 2.0E-12 |
| 7 | g9518.t1 | Pfam | PF00176 | SNF2 family N-terminal domain | 708 | 1025 | 1.1E-57 |
| 1 | g9518.t1 | Pfam | PF00271 | Helicase conserved C-terminal domain | 1058 | 1165 | 1.5E-20 |
| 9 | g9518.t1 | Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1278 | 1335 | 3.5E-26 |
| 5 | g9518.t1 | Pfam | PF06461 | Domain of Unknown Function (DUF1086) | 1378 | 1517 | 4.2E-52 |
| 8 | g9518.t1 | Pfam | PF08074 | CHDCT2 (NUC038) domain | 1669 | 1795 | 3.7E-64 |
| 64 | g9518.t1 | ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 376 | 423 | 10.522 |
| 63 | g9518.t1 | ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 434 | 481 | 10.424 |
| 59 | g9518.t1 | ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 498 | 565 | 9.444 |
| 60 | g9518.t1 | ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 612 | 673 | 11.345 |
| 62 | g9518.t1 | ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 742 | 923 | 24.253 |
| 61 | g9518.t1 | ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1055 | 1217 | 19.955 |
| 34 | g9518.t1 | SMART | SM00249 | PHD_3 | 378 | 421 | 1.0E-13 |
| 33 | g9518.t1 | SMART | SM00249 | PHD_3 | 436 | 479 | 5.8E-14 |
| 36 | g9518.t1 | SMART | SM00298 | chromo_7 | 483 | 559 | 9.1E-10 |
| 35 | g9518.t1 | SMART | SM00298 | chromo_7 | 610 | 666 | 3.4E-11 |
| 39 | g9518.t1 | SMART | SM00487 | ultradead3 | 726 | 931 | 3.9E-29 |
| 37 | g9518.t1 | SMART | SM00490 | helicmild6 | 1081 | 1165 | 3.6E-25 |
| 32 | g9518.t1 | SMART | SM01147 | DUF1087_2 | 1274 | 1339 | 1.8E-33 |
| 38 | g9518.t1 | SMART | SM01146 | DUF1086_2 | 1359 | 1520 | 1.1E-86 |
| 18 | g9518.t1 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 347 | 421 | 1.46E-16 |
| 17 | g9518.t1 | SUPERFAMILY | SSF54160 | Chromo domain-like | 449 | 564 | 8.79E-17 |
| 16 | g9518.t1 | SUPERFAMILY | SSF54160 | Chromo domain-like | 592 | 663 | 1.92E-16 |
| 15 | g9518.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 729 | 958 | 6.82E-52 |
| 14 | g9518.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 960 | 1241 | 4.82E-68 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0070615 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K11643 (chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
