Gene loci information

Transcript annotation

  • This transcript has been annotated as 26S proteasome regulatory subunit 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9569 g9569.t14 TTS g9569.t14 4074061 4074061
chr_1 g9569 g9569.t14 isoform g9569.t14 4074131 4075622
chr_1 g9569 g9569.t14 exon g9569.t14.exon1 4074131 4074691
chr_1 g9569 g9569.t14 cds g9569.t14.CDS1 4074131 4074691
chr_1 g9569 g9569.t14 exon g9569.t14.exon2 4074861 4075251
chr_1 g9569 g9569.t14 cds g9569.t14.CDS2 4074861 4075251
chr_1 g9569 g9569.t14 exon g9569.t14.exon3 4075308 4075479
chr_1 g9569 g9569.t14 cds g9569.t14.CDS3 4075308 4075479
chr_1 g9569 g9569.t14 exon g9569.t14.exon4 4075547 4075622
chr_1 g9569 g9569.t14 cds g9569.t14.CDS4 4075547 4075622
chr_1 g9569 g9569.t14 TSS g9569.t14 4075709 4075709

Sequences

>g9569.t14 Gene=g9569 Length=1200
ATGCCGGATCATTTAGGTGATGATATGCGTAAGGTGAAAGTGGACGATAAGGAAAAAGAT
GAGCCAGTAATAAAAGATCTCGATGAAGGAGATATTGAGCTTTTAAAGACTTATGGACAG
GGACAGTATCATAAAAGTATCAAACAAATTGAAGATGATATCCAAAAGGCAATTAAACAA
GTTAATGAACTCACTGGAATCAAAGAAAGTGACACTGGTCTTGCTCCTCCAGCTTTGTGG
GATTTAGCTGCTGATAAACAAACACTTCAGAATGAGCAACCATTACAAGTAGCTCGCTGT
ACAAAAATTATTAATGCGGATTCGGATGATCCTAAATATATCATCAATGTTAAGCAATTT
GCAAAATTTGTAGTTGATCTTGCTGACTCAGTTGCACCAACAGATATTGAAGAAGGAATG
CGTGTGGGTGTTGATAGAAATAAATATCAAATTCATATTCCATTGCCTCCGAAAATTGAT
CCAACTGTTACAATGATGCAAGTTGAAGATAAACCAGATGTCACTTACTCAGATGTTGGA
GGATGTAAAGAACAGATTGAGAAACTTAGAGAAGTTGTTGAAACACCTCTCTTGCATCCA
GAAAAGTTTGTCACACTCGGTATTGAACCACCAAAAGGCAAATATGTCGGTGAAGGAGCG
AGAATGGTTCGCGAATTATTTGAAATGGCACGCAGTAAAAAAGCTTGTCTCATCTTTTTC
GATGAAATTGATGCTATTGGTGGTGCACGTTTTGACGATGGTGCAGGAGGAGATAATGAA
GTTCAAAGAACTATGTTGGAACTTATTAATCAACTTGATGGTTTTGATCCTCGTGGTAAT
ATCAAAGTTTTGATGGCTACAAATCGTCCTGATACTTTAGATCCTGCATTAATGCGTCCT
GGTCGTCTCGATAGAAAAGTTGAATTTGGCTTACCTGACCTCGAAGGAAGAGCTCACATT
TTTAAAATTCATGCTCGTTCAATGTCTGTTGAGCGTGATATTCGCTTTGAATTGCTTGCT
CGATTATGTCCTAATTCAACTGGTGCTGAAATTCGATCAGTTTGCACAGAAGCTGGCATG
TTTGCTATTCGTGCACGACGTAAAGTTGCAACAGAGAAAGATTTCCTTGAAGCTGTGAAC
AAAGTCATCAAGAGCTACGCCAAATTCTCAGCTACTCCACGTTACATGACTTACAATTAA

>g9569.t14 Gene=g9569 Length=399
MPDHLGDDMRKVKVDDKEKDEPVIKDLDEGDIELLKTYGQGQYHKSIKQIEDDIQKAIKQ
VNELTGIKESDTGLAPPALWDLAADKQTLQNEQPLQVARCTKIINADSDDPKYIINVKQF
AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVG
GCKEQIEKLREVVETPLLHPEKFVTLGIEPPKGKYVGEGARMVRELFEMARSKKACLIFF
DEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRP
GRLDRKVEFGLPDLEGRAHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM
FAIRARRKVATEKDFLEAVNKVIKSYAKFSATPRYMTYN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g9569.t14 CDD cd00009 AAA 218 311 2.04692E-11
13 g9569.t14 Coils Coil Coil 47 67 -
12 g9569.t14 Gene3D G3DSA:2.40.50.140 - 40 166 5.1E-25
10 g9569.t14 Gene3D G3DSA:3.40.50.300 - 167 213 1.4E-7
9 g9569.t14 Gene3D G3DSA:3.40.50.300 - 214 310 7.1E-31
11 g9569.t14 Gene3D G3DSA:1.10.8.60 - 312 384 7.8E-23
4 g9569.t14 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 18 213 1.9E-215
6 g9569.t14 PANTHER PTHR23073:SF13 26S PROTEASOME REGULATORY SUBUNIT 7 18 213 1.9E-215
3 g9569.t14 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 214 397 1.9E-215
5 g9569.t14 PANTHER PTHR23073:SF13 26S PROTEASOME REGULATORY SUBUNIT 7 214 397 1.9E-215
1 g9569.t14 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 310 1.9E-23
2 g9569.t14 Pfam PF17862 AAA+ lid domain 333 377 1.0E-8
8 g9569.t14 ProSitePatterns PS00674 AAA-protein family signature. 281 299 -
7 g9569.t14 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 172 386 1.02E-46

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0036402 proteasome-activating activity MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values